From e0c86976bfac4d38e3686c33508996e44b628656 Mon Sep 17 00:00:00 2001
From: LianeHughes <68756672+LianeHughes@users.noreply.github.com>
Date: Mon, 23 Oct 2023 09:18:27 +0200
Subject: [PATCH] update publications graph

Also remove KTH graphs from runner (not updating for now)
---
 runner_every10mins.sh | 6 +++---
 runner_weekly.sh      | 3 ++-
 2 files changed, 5 insertions(+), 4 deletions(-)

diff --git a/runner_every10mins.sh b/runner_every10mins.sh
index 7485366..19bf08d 100644
--- a/runner_every10mins.sh
+++ b/runner_every10mins.sh
@@ -2,9 +2,9 @@ export CODE_PATH=/code
 
 # Covid quatification SLU
 PYTHONPATH="$CODE_PATH"/covid-portal-visualisations/wastewater python "$CODE_PATH"/covid-portal-visualisations/wastewater/combined_slu_regular.py > "$CODE_PATH"/output/wastewater_combined_slu_regular.json
-# Covid quatification KTH
-PYTHONPATH="$CODE_PATH"/covid-portal-visualisations/wastewater python "$CODE_PATH"/covid-portal-visualisations/wastewater/combined_stockholm_regular.py > "$CODE_PATH"/output/wastewater_combined_stockholm.json
-PYTHONPATH="$CODE_PATH"/covid-portal-visualisations/wastewater python "$CODE_PATH"/covid-portal-visualisations/wastewater/quant_malmo_kthplot.py > "$CODE_PATH"/output/wastewater_kthmalmo.json
+# Covid quatification KTH (not currently updating)
+#PYTHONPATH="$CODE_PATH"/covid-portal-visualisations/wastewater python "$CODE_PATH"/covid-portal-visualisations/wastewater/combined_stockholm_regular.py > "$CODE_PATH"/output/wastewater_combined_stockholm.json
+#PYTHONPATH="$CODE_PATH"/covid-portal-visualisations/wastewater python "$CODE_PATH"/covid-portal-visualisations/wastewater/quant_malmo_kthplot.py > "$CODE_PATH"/output/wastewater_kthmalmo.json
 # Covid quatification GU
 PYTHONPATH="$CODE_PATH"/covid-portal-visualisations/wastewater python "$CODE_PATH"/covid-portal-visualisations/wastewater/gothenburg_covid.py > "$CODE_PATH"/output/wastewater_gothenburg.json
 # Enteric virus GU
diff --git a/runner_weekly.sh b/runner_weekly.sh
index 4f3bc82..cab5cfb 100755
--- a/runner_weekly.sh
+++ b/runner_weekly.sh
@@ -3,7 +3,8 @@ export CODE_PATH=/code
 PYTHONPATH="$CODE_PATH"/covid-portal-visualisations/Wordcloud python "$CODE_PATH"/gen_clouds.py
 
 # Publication related updates
-python "$CODE_PATH"/gen_publication_count.py > "$CODE_PATH"/output/covid-portal-publication-counts.json
+PYTHONPATH="$CODE_PATH"/covid-portal-visualisations/Count_publications python "$CODE_PATH"/covid-portal-visualisations/Count_publications/count_publications.py > "$CODE_PATH"/output/COVID_publication_count.json
+#python "$CODE_PATH"/gen_publication_count.py > "$CODE_PATH"/output/covid-portal-publication-counts.json
 python "$CODE_PATH"/gen_recent_pub.py > "$CODE_PATH"/output/covid-portal-recent10.json
 
 # Upload generated files