diff --git a/gen_publication_count.py b/gen_publication_count.py
deleted file mode 100644
index c8ed70e..0000000
--- a/gen_publication_count.py
+++ /dev/null
@@ -1,35 +0,0 @@
-import json
-
-import pandas
-import requests
-
-# get data
-res = requests.get("https://publications-covid19.scilifelab.se/publications.json")
-txt = res.json()
-df = pandas.json_normalize(txt["publications"])
-df = df[["type", "published"]]
-
-# for now, assume dates with day as 00 are 1st day
-df.replace("-00", "-01", regex=True, inplace=True)
-
-# make the cumulative sum of papers published
-df.published = pandas.to_datetime(df["published"], format="%Y-%m-%d").dt.date
-currdate = pandas.to_datetime("today").date()
-df = df[df["published"] < currdate]
-df.sort_values(by="published", inplace=True)
-df1 = df["published"].value_counts().sort_index().reset_index()
-df1["cumulativecount"] = df1["published"].cumsum()
-
-# find number of papers published in each month
-df["year"] = pandas.DatetimeIndex(df["published"]).year
-df["month"] = pandas.DatetimeIndex(df["published"]).month
-df["index"] = pandas.to_datetime(df[["year", "month"]].assign(day=1))
-df2 = df.groupby(["index"]).size().reset_index(name="Number Added")
-
-outdata = {}
-outdata["dates"] = list(str(val) for val in df1["index"])
-outdata["cumsums"] = list(df1["cumulativecount"])
-outdata["months"] = list(str(val).replace(" ", "T") for val in df2["index"])
-outdata["per_month"] = list(df2["Number Added"])
-
-print(json.dumps(outdata))
diff --git a/gen_symptoms_data.py b/gen_symptoms_data.py
deleted file mode 100644
index 97946e2..0000000
--- a/gen_symptoms_data.py
+++ /dev/null
@@ -1,28 +0,0 @@
-import csv
-import json
-
-import pandas
-import requests
-
-# data
-req = requests.get("https://blobserver.dc.scilifelab.se/blob/CSSS_estimates.csv")
-reader = csv.reader(req.text.splitlines())
-data = list(reader)[-21:]
-df1 = pandas.DataFrame(
-    data[0:], columns=["Lan", "Datum", "Uppskattning", "Low_CI", "High_CI"]
-)
-
-# format data
-df1["Datum"] = pandas.to_datetime(df1["Datum"])
-df1.sort_values(by="Datum", ascending=False, inplace=True)
-df1.drop_duplicates("Lan", keep="first", inplace=True)
-df1["Uppskattning"] = pandas.to_numeric(df1["Uppskattning"], errors="coerce")
-df1["Uppskattning"] = df1["Uppskattning"].fillna(-0.1)
-
-outdata = {}
-
-outdata["z"] = list(df1["Uppskattning"])
-outdata["custom"] = [[val] for val in outdata["z"]]
-outdata["Lan"] = list(df1["Lan"])
-
-print(json.dumps(outdata))
diff --git a/requirements.txt b/requirements.txt
index d6b71fc..5791573 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,28 +1,13 @@
+# DC-DYNAMIC DEPENDENCIES
 beautifulsoup4==4.11.1
-certifi==2022.9.24
-chardet==5.0.0
-charset-normalizer==2.1.0
-cycler==0.11.0
-DateTime==4.5
-et-xmlfile==1.1.0
-fonttools==4.35.0
-idna==3.3
-kiwisolver==1.4.4
+requests==2.32.3
 lxml==4.9.1
-matplotlib==3.5.3
-numpy==1.23.2
-openpyxl==3.0.10
-packaging==21.3
-pandas==1.4.3
-Pillow==9.2.0
-plotly==5.10.0
-pyparsing==3.0.9
-python-dateutil==2.8.2
-pytz==2022.2.1
-requests==2.28.1
-six==1.16.0
-soupsieve==2.3.2.post1
-tenacity==8.0.1
-urllib3==1.26.13
-wordcloud==1.8.2.2
-zope.interface==5.4.0
+
+# VISUALISATIONS DEPENDENCIES
+matplotlib==3.9.1.post1
+numpy==2.0.1
+openpyxl==3.1.5
+pandas==2.2.2
+pillow==10.4.0
+plotly==5.23.0
+wordcloud==1.9.3
diff --git a/runner_daily.sh b/runner_daily.sh
index bf473ce..3a3acf6 100755
--- a/runner_daily.sh
+++ b/runner_daily.sh
@@ -1,5 +1,7 @@
 export CODE_PATH=/code
 
+# Feed SciLifeLab figshare data to Slack
 python "$CODE_PATH"/slack_figshare.py
 
+# Update EBI index file
 PYTHONPATH="$CODE_PATH"/pathogens-portal-scripts/EBI_indexing python "$CODE_PATH"/pathogens-portal-scripts/EBI_indexing/update_index_json.py
diff --git a/runner_every10mins.sh b/runner_every10mins.sh
index 32448f6..0519259 100644
--- a/runner_every10mins.sh
+++ b/runner_every10mins.sh
@@ -1,20 +1,13 @@
 export CODE_PATH=/code
 
-# Covid quatification SLU
-
+# Wastewater SARS-CoV-2 quantification SLU
 PYTHONPATH="$CODE_PATH"/pathogens-portal-visualisations/wastewater python "$CODE_PATH"/pathogens-portal-visualisations/wastewater/combined_slu_regular.py > "$CODE_PATH"/output/wastewater_combined_slu_regular.json
-# Covid quatification KTH
-#PYTHONPATH="$CODE_PATH"/pathogens-portal-visualisations/wastewater python "$CODE_PATH"/pathogens-portal-visualisations/wastewater/combined_stockholm_regular.py > "$CODE_PATH"/output/wastewater_combined_stockholm.json
-#PYTHONPATH="$CODE_PATH"/pathogens-portal-visualisations/wastewater python "$CODE_PATH"/pathogens-portal-visualisations/wastewater/quant_malmo_kthplot.py > "$CODE_PATH"/output/wastewater_kthmalmo.json
-# Covid quatification GU
-PYTHONPATH="$CODE_PATH"/pathogens-portal-visualisations/wastewater python "$CODE_PATH"/pathogens-portal-visualisations/wastewater/gothenburg_covid.py > "$CODE_PATH"/output/wastewater_gothenburg.json
-# Enteric virus GU
-PYTHONPATH="$CODE_PATH"/pathogens-portal-visualisations/wastewater python "$CODE_PATH"/pathogens-portal-visualisations/wastewater/enteric_viruses_gu.py > "$CODE_PATH"/output/enteric_graph_gu.json
-# Influenza virus SLU
+
+# Wastewater influenza quantification SLU
 PYTHONPATH="$CODE_PATH"/pathogens-portal-visualisations/wastewater python "$CODE_PATH"/pathogens-portal-visualisations/wastewater/combined_slu_influenza_a.py > "$CODE_PATH"/output/wastewater_slu_infA.json
 PYTHONPATH="$CODE_PATH"/pathogens-portal-visualisations/wastewater python "$CODE_PATH"/pathogens-portal-visualisations/wastewater/combined_slu_influenza_b.py > "$CODE_PATH"/output/wastewater_slu_infB.json
 
-# Serology
+# Serology statistics SARS-CoV-2
 PYTHONPATH="$CODE_PATH"/pathogens-portal-visualisations/serology python "$CODE_PATH"/pathogens-portal-visualisations/serology/weekly-serology-tests.py > "$CODE_PATH"/output/weekly_serology_tests.json
 PYTHONPATH="$CODE_PATH"/pathogens-portal-visualisations/serology python "$CODE_PATH"/pathogens-portal-visualisations/serology/cumulative-serology-tests.py > "$CODE_PATH"/output/cumulative_serology_tests.json
 
diff --git a/runner_hourly.sh b/runner_hourly.sh
index 9e55beb..c62a498 100755
--- a/runner_hourly.sh
+++ b/runner_hourly.sh
@@ -1,7 +1,9 @@
 export CODE_PATH=/code
 
+# Post items from SciLifeLab feed to Slack channel
 python "$CODE_PATH"/slack_feeds.py $CODE_PATH/output
 
+
 # Upload generated files
 for filename in $(ls $CODE_PATH/output) ; do
     curl "https://blobserver.dc.scilifelab.se/blob/$filename" -H "x-accesskey: $ACCESS_KEY" --upload-file "output/$filename"
diff --git a/runner_weekly.sh b/runner_weekly.sh
index d03753a..4069405 100755
--- a/runner_weekly.sh
+++ b/runner_weekly.sh
@@ -1,12 +1,13 @@
 export CODE_PATH=/code
 
+# Wordclouds generator
 PYTHONPATH="$CODE_PATH"/pathogens-portal-visualisations/Wordcloud python "$CODE_PATH"/gen_clouds.py
 
 # Publication related updates
 PYTHONPATH="$CODE_PATH"/pathogens-portal-visualisations/Count_publications python "$CODE_PATH"/pathogens-portal-visualisations/Count_publications/count_publications.py > "$CODE_PATH"/output/COVID_publication_count.json
-#python "$CODE_PATH"/gen_publication_count.py > "$CODE_PATH"/output/covid-portal-publication-counts.json
 python "$CODE_PATH"/gen_recent_pub.py > "$CODE_PATH"/output/covid-portal-recent10.json
 
+
 # Upload generated files
 for filename in $(ls $CODE_PATH/output) ; do
     curl "https://blobserver.dc.scilifelab.se/blob/$filename" -H "x-accesskey: $ACCESS_KEY" --upload-file "output/$filename"