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_pkgdown.yml
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/
_pkgdown.yml
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template:
bootstrap: 5
params:
bootswatch: united
reference:
- title: "System Basics"
desc: "Building systems, setting options, access workshop elements etc."
- contents:
- build_system
- system_new
- system_new_list
- workshop_fetch
- system_fetch_parameters
- system_fetch_iiv
- system_fetch_set
- system_fetch_template
- system_fetch_TSsys
- system_view
- system_check_requirements
- system_set_option
- system_set_parameter
- system_set_iiv
- title: "Simulation"
desc: "Individual and population simulations"
- contents:
- run_simulation_ubiquity
- simulate_subjects
- system_load_data
- system_select_set
- som_to_df
- system_check_steady_state
- system_zero_inputs
- system_set_parameter
- system_set_bolus
- system_set_rate
- system_set_covariate
- run_simulation_titrate
- system_new_tt_rule
- system_set_tt_cond
- system_set_tt_rate
- title: "Estimation"
desc: "Naive-pooled parameters estimation"
- contents:
- system_estimate_parameters
- system_fetch_guess
- system_set_guess
- system_plot_cohorts
- system_clear_cohorts
- system_define_cohort
- system_define_cohorts_nm
- system_simulate_estimation_results
- system_od_general
- title: "Reporting"
desc: "The following functions are used to create, modify and save Word and PowerPoint reports"
- contents:
- starts_with("system_rpt_")
- starts_with("system_fetch_rpt_")
- starts_with("system_set_rpt_")
- title: "NCA"
desc: "The following functions are used to run NCA and summarize results"
- contents:
- system_fetch_nca
- system_fetch_nca_columns
- starts_with("system_nca_")
- title: "General Functions"
desc: ""
- contents:
- calculate_halflife
- gg_axis
- gg_log10_xaxis
- gg_log10_yaxis
- estimate_parameters
- linspace
- logspace
- pad_string
- prepare_figure
- vp
- var2string
- system_log_debug_save
- system_log_init
- tic
- toc
navbar:
left:
- text: Tutorials
icon: fas fa-chalkboard-teacher
menu:
- text: "--------------------------"
- text: "Getting Started"
- text: "Individual and Population Simulations"
href: articles/Simulation.html
- text: "ubiquity Modeling Language"
href: articles/Language.html
- text: "Naive-Pooled Parameter Estimation"
href: articles/Estimation.html
- text: "--------------------------"
- text: "Other Analysis Options"
- text: "Deploying Your Models in a Shiny App"
href: articles/Deployment.html
- text: "Trial/Rule-Based Simulations"
href: articles/Titration.html
- text: "Non-Compartmental Analysis"
href: articles/NCA.html
- text: "Integrated Word and PowerPoint Reporting"
href: articles/Reporting.html
- text: Screencasts
icon: fas fa-video
menu:
- text: "--------------------------"
- text: "Modeling"
- text: "Individual and Population Simulations"
href: https://vimeo.com/382859445
- text: "Model Deployment"
href: https://vimeo.com/382860283
- text: "Naive-Pooled Parameter Estimation"
href: https://vimeo.com/manage/videos/382829588
- text: "--------------------------"
- text: "Other Tools"
- text: "Tabula: Extracting Tabular Data from PDFs"
href: https://vimeo.com/650643574
- text: "Functions"
icon: fas fa-hat-wizard
href: reference/index.html
- text: "News"
icon: fas fa-rss
href: news/index.html