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setup.py
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setup.py
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from setuptools import find_packages
from setuptools import setup
setup(
name="metagenomic-deepFRI",
version="0.1",
description="Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.",
author="Piotr Kucharski",
author_email="soliareofastorauj@gmail.com",
url="https://github.com/bioinf-mcb/Metagenomic-DeepFRI",
download_url="https://github.com/bioinf-mcb/Metagenomic-DeepFRI",
license="GNU GPLv3",
install_requires=[
"biopython==1.79",
"numpy==1.21.5",
"pandas==1.3.5",
"pathos==0.2.8",
"scikit-learn==1.0.2",
"tensorflow==2.7.0",
],
packages=find_packages(),
)
print("If installing manually, please get additional packages")
print("apt-get install libboost-numpy1.71-dev libboost-python1.71-dev")
print("apt install mmseqs2")