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setup.py
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setup.py
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import io
import os
from setuptools import setup, find_packages
def read(*paths, **kwargs):
"""
Read the contents of a text file safely.
"""
content = ""
with io.open(
os.path.join(os.path.dirname(__file__), *paths),
encoding=kwargs.get("encoding", "utf8"),
) as open_file:
content = open_file.read().strip()
return content
def read_requirements(path):
return [
line.strip()
for line in read(path).split("\n")
if not line.startswith(('"', "#", "-", "git+"))
]
PACK_NAME = 'CodonU'
AUTHOR_NAME = 'Souradipto Choudhuri'
AUTHOR_EMAIL = 'sourochaudhuri@gmail.com'
VERSION = '1.1.2'
DESC = 'An integrated package for codon usage analysis'
setup(
name='CodonU',
version=VERSION,
description=DESC,
long_description=read("README_pypi.md"),
long_description_content_type="text/markdown",
author=AUTHOR_NAME,
author_email=AUTHOR_EMAIL,
url='https://github.com/SouradiptoC/codon_usage',
project_urls={
"Bug Tracker": "https://github.com/SouradiptoC/codon_usage/issues",
"Documentation": "https://codonu.readthedocs.io/en/latest/?badge=latest",
"Source Code": "https://github.com/SouradiptoC/codon_usage"
},
license='MIT License',
packages=find_packages(exclude=["tests", ".github"]),
install_requires=["biopython~=1.79", "numpy~=1.24.2", "pandas~=2.1.1",
"matplotlib>=3.6.3", "scipy~=1.10.0",
"prince~=0.12.1", "gtAI~=1.0.4"],
keywords=['bioinformatics', 'bioinformatics-analysis', 'bioinformatics-tool', 'codon-usage', 'codon', 'codon-bias',
'genomic-analysis', 'genome', 'codonW', 'tAI'],
classifiers=[
"Development Status :: 5 - Production/Stable",
"Natural Language :: English",
"Topic :: Scientific/Engineering :: Bio-Informatics",
"License :: OSI Approved :: MIT License",
"Programming Language :: Python :: 3",
"Operating System :: Unix",
"Operating System :: MacOS :: MacOS X",
"Operating System :: Microsoft :: Windows",
"Intended Audience :: Developers",
"Intended Audience :: Education",
"Intended Audience :: Healthcare Industry",
"Intended Audience :: Science/Research"
]
)