tassel_to_J_parameters.R

# This R command is an indirect call to the "true" parameter file
# The rmd code doesn't need to be changed
# just place here the name (and location) of the parameter file to be used in the 'source command.
# the purpose is to make it easier to run again previous sessions. 
# It is even possible to make minor changes to the parameters *after* the 'source' command.

# The 240+2 individuals of the 1 to 6 plate set
#source("D:/Mes donnees/sequencage/2017/article sequence/Tassel_to_J/TtJGIT/tassel_to_J_parameters_1to6.R")
source("first_round.R")
#source("D:/Mes donnees/sequencage/2017/article sequence/Tassel_to_J/TtJGIT/tassel_to_J_parameters_1to6.R")
# Adding more large scaffolds, keeping the same number of individuals
#source("D:/Mes donnees/sequencage/2017/article sequence/Tassel_to_J/TtJGIT/tassel_to_J_parameters_1to6_PR_07.R")
# The 89 individual dataset without prefiltering