diff --git a/checkm/1.2.2/Dockerfile b/checkm/1.2.2/Dockerfile index b1866923d..571add7de 100644 --- a/checkm/1.2.2/Dockerfile +++ b/checkm/1.2.2/Dockerfile @@ -44,7 +44,6 @@ RUN wget https://data.ace.uq.edu.au/public/CheckM_databases/checkm_data_2015_01_ mkdir checkm_db && tar -C checkm_db -xvf checkm_data_2015_01_16.tar.gz &&\ checkm data setRoot checkm_db -# run an internal test -RUN checkm test ./checkm_test_results &&\ - tail -n2 ./checkm_test_results/checkm.log &&\ - head ./checkm_test_results/results/qa_test.tsv +# run test with internal test data +RUN checkm lineage_wf -r ./checkm_db/test_data/ ./checkm_test_results +