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SEMINAR 3: Introduction to nf-core/differential abundance pipeline

Video link: https://vimeo.com/824613336?share=copy

Presenter: Patricia, Talya, Abhinav

Overview

Links/Resources used:

  1. nf-core tools docs https://nf-co.re/tools/

  2. MutltiQC: https://multiqc.info/

  3. MegaQC: https://megaqc.info/

  4. nf-core/fetchngs pipeline

    1. Main page: https://nf-co.re/fetchngs
    2. Usage: https://nf-co.re/fetchngs/1.9/usage
    3. Parameters: https://nf-co.re/fetchngs/1.9/parameters
    4. AWS test results: https://nf-co.re/fetchngs/results#fetchngs/results-084e5ef3038b3210efaf203ce57d0ba21a6ece0b/
    5. Output docs: https://nf-co.re/fetchngs/1.9/output
    6. Slack channel: #fetchngs https://nfcore.slack.com/channels/fetchngs

  5. nf-core/differentialabundance pipeline

    1. Main page: https://nf-co.re/differentialabundance
    2. Usage: https://nf-co.re/differentialabundance/1.2.0/usage
    3. Parameters: https://nf-co.re/differentialabundance/1.2.0/parameters
    4. AWS test results: https://nf-co.re/differentialabundance/results#differentialabundance/results-3a849f046990707cad2a0df751c371ac7f1165ab/
    5. Output docs: https://nf-co.re/differentialabundance/1.2.0/output
    6. Slack channel #differentialabundance https://nfcore.slack.com/channels/differentialabundance

  6. nf-core/rnaseq pipeline

    1. Main page: https://nf-co.re/rnaseq
    2. Usage: https://nf-co.re/rnaseq/3.11.1/usage
    3. Parameters: https://nf-co.re/rnaseq/3.11.1/parameters
    4. AWS test results: https://nf-co.re/rnaseq/results
    5. Output docs: https://nf-co.re/rnaseq/3.11.1/output
    6. Slack channel #rnaseq