{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":554829975,"defaultBranch":"main","name":"DccXmlGenerator","ownerLogin":"TheJacksonLaboratory","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2022-10-20T13:21:07.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/19977120?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1666272515.474804","currentOid":""},"activityList":{"items":[{"before":"a6f18e024cf8d820da7039db25fb10958a564e76","after":"533402a8832533a13981e66e45be252641b419d8","ref":"refs/heads/main","pushedAt":"2024-09-04T10:55:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"McFarlandInMaine","name":null,"path":"/McFarlandInMaine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/88500545?s=80&v=4"},"commit":{"message":"New code for CLIMB fixes\n\nWe are now circumventing the extended API for almost all calls because 1) Rockstep made a change that broke the mice fetch and 2) it had a bug anyway.","shortMessageHtmlLink":"New code for CLIMB fixes"}},{"before":"eccb05a73f962206ea93aaf7a67e499e12165322","after":"a6f18e024cf8d820da7039db25fb10958a564e76","ref":"refs/heads/main","pushedAt":"2024-08-14T18:23:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"McFarlandInMaine","name":null,"path":"/McFarlandInMaine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/88500545?s=80&v=4"},"commit":{"message":"Many incremental changes\n\nAppears to be encoding all procedures","shortMessageHtmlLink":"Many incremental changes"}},{"before":"da9fffa73964c391bda6ced3fa5d0913c07c00b3","after":"eccb05a73f962206ea93aaf7a67e499e12165322","ref":"refs/heads/main","pushedAt":"2024-07-12T19:15:17.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"McFarlandInMaine","name":null,"path":"/McFarlandInMaine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/88500545?s=80&v=4"},"commit":{"message":"Update climb_api.py\n\nAdded extra checks for existence of elements before call to post_process_outputs","shortMessageHtmlLink":"Update climb_api.py"}},{"before":"6f87cddee618b91e6a28efef35d7a3c6875173f8","after":"da9fffa73964c391bda6ced3fa5d0913c07c00b3","ref":"refs/heads/main","pushedAt":"2024-07-03T12:51:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"McFarlandInMaine","name":null,"path":"/McFarlandInMaine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/88500545?s=80&v=4"},"commit":{"message":"Various tweaks and enhancements.\n\nThis version contains a few bug fixes and tweaks to the logging.","shortMessageHtmlLink":"Various tweaks and enhancements."}},{"before":"2b2837a39a35bd9c02c6e2690b5046e80550c918","after":"6f87cddee618b91e6a28efef35d7a3c6875173f8","ref":"refs/heads/main","pushedAt":"2024-05-24T19:10:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"McFarlandInMaine","name":null,"path":"/McFarlandInMaine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/88500545?s=80&v=4"},"commit":{"message":"Working version with new logger\n\nAdded a logger module and various cleanup and comments for CLIMB and PFS","shortMessageHtmlLink":"Working version with new logger"}},{"before":"b48a9acae9ba053c9f818537786200055b69f3b4","after":"2b2837a39a35bd9c02c6e2690b5046e80550c918","ref":"refs/heads/main","pushedAt":"2024-05-19T18:00:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"McFarlandInMaine","name":null,"path":"/McFarlandInMaine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/88500545?s=80&v=4"},"commit":{"message":"Added new logger support\n\nMoved the logging to a common module.","shortMessageHtmlLink":"Added new logger support"}},{"before":"aed85803a9d8bbd1b4b608c8814db526e74f4956","after":"b48a9acae9ba053c9f818537786200055b69f3b4","ref":"refs/heads/main","pushedAt":"2024-05-19T17:58:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"McFarlandInMaine","name":null,"path":"/McFarlandInMaine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/88500545?s=80&v=4"},"commit":{"message":"Created my_logger.py\n\nThis module handles all the logging for this project.","shortMessageHtmlLink":"Created my_logger.py"}},{"before":"7c8f92e5037ecaea8a260f063a38ac8b2d7cb0b3","after":"aed85803a9d8bbd1b4b608c8814db526e74f4956","ref":"refs/heads/main","pushedAt":"2024-05-17T19:29:29.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"McFarlandInMaine","name":null,"path":"/McFarlandInMaine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/88500545?s=80&v=4"},"commit":{"message":"Working version - submitted from CORE\n\nThis version has a number of changes that enables submissions from core pfs","shortMessageHtmlLink":"Working version - submitted from CORE"}},{"before":"2788d63b176172838f6004c93b6d272e24543e5d","after":"7c8f92e5037ecaea8a260f063a38ac8b2d7cb0b3","ref":"refs/heads/main","pushedAt":"2024-04-30T15:47:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"McFarlandInMaine","name":null,"path":"/McFarlandInMaine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/88500545?s=80&v=4"},"commit":{"message":"some improvements based on code walkthrough\n\nGetting closer to having a first pass parser","shortMessageHtmlLink":"some improvements based on code walkthrough"}},{"before":"498e5a59a1ceaf9452bdf7cf059ceee7688326ad","after":"2788d63b176172838f6004c93b6d272e24543e5d","ref":"refs/heads/main","pushedAt":"2024-04-30T13:03:30.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"McFarlandInMaine","name":null,"path":"/McFarlandInMaine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/88500545?s=80&v=4"},"commit":{"message":"Skeleton for PFS validation\n\nAdded methods to get the data for PFS validation but none of the logic","shortMessageHtmlLink":"Skeleton for PFS validation"}},{"before":"4a0f128906a3a3b29dc96258beb4d5587d007daf","after":"498e5a59a1ceaf9452bdf7cf059ceee7688326ad","ref":"refs/heads/main","pushedAt":"2024-04-25T19:41:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"McFarlandInMaine","name":null,"path":"/McFarlandInMaine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/88500545?s=80&v=4"},"commit":{"message":"Working version\n\nWorking version pre-go-live","shortMessageHtmlLink":"Working version"}},{"before":"9357294590b39c9ce03d937629aa09e28411d687","after":"4a0f128906a3a3b29dc96258beb4d5587d007daf","ref":"refs/heads/main","pushedAt":"2024-03-29T14:04:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"McFarlandInMaine","name":null,"path":"/McFarlandInMaine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/88500545?s=80&v=4"},"commit":{"message":"Fully implemented - at last\n\nAll functions are implemented. A good bit of testing completed.","shortMessageHtmlLink":"Fully implemented - at last"}},{"before":"81746282b01e1d4a138e95f404727abf92a39029","after":"9357294590b39c9ce03d937629aa09e28411d687","ref":"refs/heads/main","pushedAt":"2024-03-26T11:37:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"McFarlandInMaine","name":null,"path":"/McFarlandInMaine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/88500545?s=80&v=4"},"commit":{"message":"Some minor bug fixes.\n\nBug fix for multiple experiments and underscores in CV terms","shortMessageHtmlLink":"Some minor bug fixes."}},{"before":"e94082f04f50ec42a1359383fe1a12ff09308154","after":"81746282b01e1d4a138e95f404727abf92a39029","ref":"refs/heads/main","pushedAt":"2024-03-23T17:04:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"McFarlandInMaine","name":null,"path":"/McFarlandInMaine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/88500545?s=80&v=4"},"commit":{"message":"Working well with PFS\n\nFixed a lot of issues that were preventing an XML being generated from PFS","shortMessageHtmlLink":"Working well with PFS"}},{"before":"0a9945da80acc78d37562a02c4da8a49505a6891","after":"e94082f04f50ec42a1359383fe1a12ff09308154","ref":"refs/heads/main","pushedAt":"2024-03-11T20:32:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"McFarlandInMaine","name":null,"path":"/McFarlandInMaine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/88500545?s=80&v=4"},"commit":{"message":"Added 'images' to image pth for CLIMB images\n\nAdded 'images' to image pth for CLIMB images","shortMessageHtmlLink":"Added 'images' to image pth for CLIMB images"}},{"before":"26620a7cc1d1fe1c4a3391dbddfcae722c239687","after":"0a9945da80acc78d37562a02c4da8a49505a6891","ref":"refs/heads/main","pushedAt":"2024-03-11T19:13:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"McFarlandInMaine","name":null,"path":"/McFarlandInMaine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/88500545?s=80&v=4"},"commit":{"message":"Added a lot of new code for JAXLIMS support\n\nAdded a lot of new code for JAXLIMS support and am continuing debugging CORE PFS.","shortMessageHtmlLink":"Added a lot of new code for JAXLIMS support"}},{"before":"99bfbd0976b53623e7cdf9309409328690643a14","after":"26620a7cc1d1fe1c4a3391dbddfcae722c239687","ref":"refs/heads/main","pushedAt":"2024-03-06T16:22:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"McFarlandInMaine","name":null,"path":"/McFarlandInMaine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/88500545?s=80&v=4"},"commit":{"message":"Update and rename Climb.py to climb_api.py\n\nStandardizing the file names for DB interfaces","shortMessageHtmlLink":"Update and rename Climb.py to climb_api.py"}},{"before":"63b5f38ab496db3d4368f64c05f7b676c0658e18","after":"99bfbd0976b53623e7cdf9309409328690643a14","ref":"refs/heads/main","pushedAt":"2024-03-06T16:21:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"McFarlandInMaine","name":null,"path":"/McFarlandInMaine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/88500545?s=80&v=4"},"commit":{"message":"Update and rename query_database.py to jaxlims_api.py\n\nStandardizing the file names","shortMessageHtmlLink":"Update and rename query_database.py to jaxlims_api.py"}},{"before":"b7d37295c16ab6af701c3cc4d4c28a50be72c0ba","after":"63b5f38ab496db3d4368f64c05f7b676c0658e18","ref":"refs/heads/main","pushedAt":"2024-03-06T16:20:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"McFarlandInMaine","name":null,"path":"/McFarlandInMaine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/88500545?s=80&v=4"},"commit":{"message":"Rename corepfs.py to core_api.py\n\nI am standardizing the source file names","shortMessageHtmlLink":"Rename corepfs.py to core_api.py"}},{"before":"8f8afc0ac6b9b41d422804438a83f5420926bafe","after":"b7d37295c16ab6af701c3cc4d4c28a50be72c0ba","ref":"refs/heads/main","pushedAt":"2024-02-03T18:40:50.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"McFarlandInMaine","name":null,"path":"/McFarlandInMaine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/88500545?s=80&v=4"},"commit":{"message":"Added logging and fixed series type encoding\n\nI added logging functionality and series type fixes so that it always ends up with a valid dict","shortMessageHtmlLink":"Added logging and fixed series type encoding"}},{"before":"171ce97f75da98cf8e50202e4a70b2fcb324bc00","after":"8f8afc0ac6b9b41d422804438a83f5420926bafe","ref":"refs/heads/main","pushedAt":"2023-11-10T19:36:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"McFarlandInMaine","name":null,"path":"/McFarlandInMaine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/88500545?s=80&v=4"},"commit":{"message":"removed reds","shortMessageHtmlLink":"removed reds"}},{"before":"521d1e7ae44a98111aaac9e0d462ceaf5dcbb5f1","after":"171ce97f75da98cf8e50202e4a70b2fcb324bc00","ref":"refs/heads/main","pushedAt":"2023-11-10T19:35:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"McFarlandInMaine","name":null,"path":"/McFarlandInMaine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/88500545?s=80&v=4"},"commit":{"message":"Generating XML for BWT\n\nGeting closer, much closer.","shortMessageHtmlLink":"Generating XML for BWT"}},{"before":"05c1f7a2e30a2d6ff55f6d14a1abbc548772f5a0","after":"521d1e7ae44a98111aaac9e0d462ceaf5dcbb5f1","ref":"refs/heads/main","pushedAt":"2023-11-10T15:45:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"McFarlandInMaine","name":null,"path":"/McFarlandInMaine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/88500545?s=80&v=4"},"commit":{"message":"Intermediate check in - under development\n\nStill a ways to. Just wanted to checkpoint the code.","shortMessageHtmlLink":"Intermediate check in - under development"}},{"before":"569f4843499b806abf3cb545900892218b052d54","after":"05c1f7a2e30a2d6ff55f6d14a1abbc548772f5a0","ref":"refs/heads/main","pushedAt":"2023-10-30T11:53:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"McFarlandInMaine","name":null,"path":"/McFarlandInMaine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/88500545?s=80&v=4"},"commit":{"message":"Removed creds","shortMessageHtmlLink":"Removed creds"}},{"before":"1f03ac1e2b79c2ef9edacb1d84f8ec0410a6c86e","after":"569f4843499b806abf3cb545900892218b052d54","ref":"refs/heads/main","pushedAt":"2023-10-30T11:30:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"McFarlandInMaine","name":null,"path":"/McFarlandInMaine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/88500545?s=80&v=4"},"commit":{"message":"Added CORE PFS support for specimens","shortMessageHtmlLink":"Added CORE PFS support for specimens"}},{"before":"cfb6a2caf49f15e28d3afc263adc8a2024523f86","after":"1f03ac1e2b79c2ef9edacb1d84f8ec0410a6c86e","ref":"refs/heads/main","pushedAt":"2023-07-14T15:23:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"McFarlandInMaine","name":null,"path":"/McFarlandInMaine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/88500545?s=80&v=4"},"commit":{"message":"Added colonyId code changed structure of data for line\n\nNeeded to grab the colonyId out of the output fixe the structure of the returned data in Climb.getProceduresGivenFilter()","shortMessageHtmlLink":"Added colonyId code changed structure of data for line"}},{"before":"40a701da86b13befde5180f420c9d9f6e76b47ce","after":"cfb6a2caf49f15e28d3afc263adc8a2024523f86","ref":"refs/heads/main","pushedAt":"2023-06-26T14:51:11.776Z","pushType":"push","commitsCount":1,"pusher":{"login":"McFarlandInMaine","name":null,"path":"/McFarlandInMaine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/88500545?s=80&v=4"},"commit":{"message":"Fixed Series DCC type\n\nThe order of DCC types with the XML file matter. I didn't know that. Ned to do simple types first.","shortMessageHtmlLink":"Fixed Series DCC type"}},{"before":"cb26f86b8a80c9040727b9492b304c30822e8223","after":"40a701da86b13befde5180f420c9d9f6e76b47ce","ref":"refs/heads/main","pushedAt":"2023-04-26T18:27:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"McFarlandInMaine","name":null,"path":"/McFarlandInMaine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/88500545?s=80&v=4"},"commit":{"message":"Added requirements.txt and document\n\nAdd a requirements.txt and a WORD doc that explain the structure and use.","shortMessageHtmlLink":"Added requirements.txt and document"}},{"before":"5d7789f67c7b2410ce6aa71e690b3b5d5ad1fa54","after":"cb26f86b8a80c9040727b9492b304c30822e8223","ref":"refs/heads/main","pushedAt":"2023-04-17T12:54:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"McFarlandInMaine","name":null,"path":"/McFarlandInMaine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/88500545?s=80&v=4"},"commit":{"message":"Strain ID was wrong\n\nI was inserting the allele ID and not the strain ID.","shortMessageHtmlLink":"Strain ID was wrong"}},{"before":"c3d31a7a448eb30f64bbb68a57527b3f42c8b85a","after":"5d7789f67c7b2410ce6aa71e690b3b5d5ad1fa54","ref":"refs/heads/main","pushedAt":"2023-04-11T12:31:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"McFarlandInMaine","name":null,"path":"/McFarlandInMaine","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/88500545?s=80&v=4"},"commit":{"message":"Added full functionality for line only submissions\n\nAdded full functionality for line only submissions, series data types, and fixed  few bugs","shortMessageHtmlLink":"Added full functionality for line only submissions"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAErJcFjQA","startCursor":null,"endCursor":null}},"title":"Activity · TheJacksonLaboratory/DccXmlGenerator"}