Merge pull request #15 from TheJacksonLaboratory/G3-339-error-when-ed…

…iting-genes G3-339: Fixing edit genes error.
TheJacksonLaboratory · Aug 6, 2024 · a6c13ef · a6c13ef
2 parents 6bbac75 + 61865a9
commit a6c13ef
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Showing 3 changed files with 5 additions and 5 deletions.
diff --git a/pyproject.toml b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "geneweaver-legacy"
-version = "1.3.4a1"
+version = "1.3.5"
 description = ""
 authors = ["Alexander Berger <alexander.berger@jax.org>"]
 readme = "README.md"

diff --git a/src/geneweaverdb.py b/src/geneweaverdb.py
@@ -4188,8 +4188,8 @@ def get_temp_geneset_values(geneset_id):
     """
     with PooledCursor() as cursor:
         cursor.execute('''SELECT gs_id, ode_gene_id, avg(src_value) as gsv_value,
-										   count(ode_gene_id) as gsv_hits, array_accum(src_id) as gsv_source_list,
-										   array_accum(src_value) as gsv_value_list,'t' as gsv_in_threshold, now() as gsv_date
+										   count(ode_gene_id) as gsv_hits, array_agg(src_id) as gsv_source_list,
+										   array_agg(src_value) as gsv_value_list,'t' as gsv_in_threshold, now() as gsv_date
 										   FROM production.temp_geneset_value
 										   WHERE gs_id=%s GROUP BY gs_id, ode_gene_id ORDER BY ode_gene_id;''' % (
             geneset_id,))

diff --git a/src/uploadfiles.py b/src/uploadfiles.py
@@ -780,8 +780,8 @@ def insert_into_geneset_value_by_gsid(gsid):
                     cursor.execute('''INSERT INTO extsrc.geneset_value (gs_id, ode_gene_id, gsv_value, gsv_hits, gsv_source_list,
                                      gsv_value_list, gsv_in_threshold, gsv_date)
                                          SELECT gs_id, ode_gene_id, avg(src_value) as gsv_value,
-                                           count(ode_gene_id) as gsv_hits, array_accum(src_id) as gsv_source_list,
-                                           array_accum(src_value) as gsv_value_list,'t' as gsv_in_threshold, now() as gsv_date
+                                           count(ode_gene_id) as gsv_hits, array_agg(src_id) as gsv_source_list,
+                                           array_agg(src_value) as gsv_value_list,'t' as gsv_in_threshold, now() as gsv_date
                                            FROM production.temp_geneset_value
                                            WHERE gs_id=%s GROUP BY gs_id,ode_gene_id ORDER BY ode_gene_id;''' % (gsid,))
                     ## Update geneset sp_id and identifier