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The materials in this archive are a subset of the official CellProfiler Input Modules Tutorial materials downloaded from: https://tutorials.cellprofiler.org/#input-modules

The official Input Modules Tutorial is being deprecated.

From the README of the Input Modules Tutorial: 2D

Example 1, 2 and 3 - the images were taken as is or modified from the Example Human cells .

The images of human cells were provided by Jason Moffat. Moffat J, Grueneberg DA, Yang X, Kim SY, Kloepfer AM, Hinkle G, Piqani B, Eisenhaure TM, Luo B, Grenier JK, Carpenter AE, Foo SY, Stewart SA, Stockwell BR, Hacohen N, Hahn WC, Lander ES, Sabatini DM, Root DE (2006) A lentiviral RNAi library for human and mouse genes applied to an arrayed viral high-content screen. Cell, 124(6):1283-98 / doi: 10.1016/j.cell.2006.01.040. PMID 16564017. The images in this example are licensed as CC-0.

Example 4 - the image of blood cells infected by malaria and stained with Giemsa reagent were taken from set BBBC041v1, available from the Broad Bioimage Benchmark Collection BBBC.

Matching images

Example 1 - the images used are from the Example Human C-N translocation.

The images were taken from image set BBBC014v1 provided by Ilya Ravkin, available from the Broad Bioimage Benchmark Collection BBBC.

Example 2 - the images used are from the Example Yeast colony classification.

Bray, Mark-Anthony et al. “Using CellProfiler for Automatic Identification and Measurement of Biological Objects in Images.” Current protocols in molecular biology vol. 109 14.17.1-14.17.13. 5 Jan. 2015, doi:10.1002/0471142727.mb1417s109.

Groups module

Example 1 and 2 - the images were taken from Example Object tracking.

Foe VE, Field CM, Odell GM. Microtubules and mitotic cycle phase modulate spatiotemporal distributions of F-actin and myosin II in Drosophila syncytial blastoderm embryos. Development. 2000 May;127(9):1767-87. PMID: 10751167.

The CellProfiler Tutorial Materials are licensed under BSD-3-Clause:

Copyright (c) 2017, CellProfiler All rights reserved.

Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:

  • Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.

  • Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.

  • Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.