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OME 2024 NGFF Challenge

At the OME 2024 Community Meeting, a set of institutions with public data repositories (including JAX) devised a proof-of-concept challenge to push for a common usable specification and tooling around the OME-Zarr format. The goal is to develop a very minimal metadata standard for published data, a working version of what these public repositories would need from a file format, and a substantial corpus of data on that format. This corpus of data will be hosted from October to December of 2024 by individual participating institutions and can be queried from a centralized reference or any compatible viewer.

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Centralized listing of samples

JAX data contribution

JAX has committed to converting and hosting the public KOMP data in the new format. This repo contains the CSVs linking to that data.

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