From 21b12f9b0f154b5a27b8704b597446015154eeb6 Mon Sep 17 00:00:00 2001
From: angarb <62404570+angarb@users.noreply.github.com>
Date: Tue, 29 Jun 2021 12:44:29 -0400
Subject: [PATCH] Update usage.md

---
 docs/usage.md | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/docs/usage.md b/docs/usage.md
index d5ea7279..7567e36a 100755
--- a/docs/usage.md
+++ b/docs/usage.md
@@ -96,6 +96,8 @@ Input files:
   --run_name                    User specified name used as prefix for output files
                                 (defaut: no prefix, only date and time)
   --download_from               Database to download FASTQ/BAMs from (available = 'TCGA', 'GTEX' or 'GEN3-DRS', 'SRA') (string)
+  				false should be used to run local files on the HPC (Sumner).
+				'TCGA' can also be used to download GDC data including HCMI data.
                                 (default: false)
   --key_file                    For downloading reads, use TCGA authentication token (TCGA) or dbGAP repository key (GTEx, path)
   				or credentials.josn file in case of 'GEN3-DRS'