From 04a8138ba72490896afa88079a90db6de100b969 Mon Sep 17 00:00:00 2001 From: Avery Fernandez Date: Tue, 5 Nov 2024 07:57:48 -0600 Subject: [PATCH 1/3] Updated urls for new repo --- README.md | 4 ++-- _config.yml | 2 +- src/about/introduction.rst | 2 +- src/about/license-reuse.rst | 4 ++-- src/shell/pubmed.rst | 2 +- 5 files changed, 7 insertions(+), 7 deletions(-) diff --git a/README.md b/README.md index 39e741a..41496e7 100644 --- a/README.md +++ b/README.md @@ -3,7 +3,7 @@ # University of Alabama Libraries Scholarly API Cookbook -The University of Alabama Libraries Scholarly API Cookbook is an open online book containing short scholarly API code examples (i.e., “recipes”) that demonstrate how to work with various scholarly web service APIs. It is part of the University of Alabama Libraries efforts to support Research Data Services. Read the book [here](https://ualibweb.github.io/UALIB_ScholarlyAPI_Cookbook/). +The University of Alabama Libraries Scholarly API Cookbook is an open online book containing short scholarly API code examples (i.e., “recipes”) that demonstrate how to work with various scholarly web service APIs. It is part of the University of Alabama Libraries efforts to support Research Data Services. Read the book [here](https://ua-libraries-research-data-services.github.io/UALIB_ScholarlyAPI_Cookbook). ## License and Reuse @@ -13,7 +13,7 @@ We have endeavored to follow the appropriate usage policies of each scholarly AP If you reuse the code, attribution would be appreciated. Please link to the Cookbook and cite our manuscript: -Link to Cookbook: https://ualibweb.github.io/UALIB_ScholarlyAPI_Cookbook/ +Link to Cookbook: https://ua-libraries-research-data-services.github.io/UALIB_ScholarlyAPI_Cookbook Citation: Scalfani, V. F.; Walker, K. W.; Simpson, L.; Fernandez, A. M.; Patel, V. D.; Ramig, A.; Gomes, C.; Moen, M. T.; Nguyen, A. M. Creating a Scholarly API Cookbook: Supporting Library Users with Programmatic Access to Information. Issues in Science and Technology Librarianship, 2023, No. 104. https://doi.org/10.29173/istl2766. diff --git a/_config.yml b/_config.yml index db8294c..66fe456 100644 --- a/_config.yml +++ b/_config.yml @@ -21,7 +21,7 @@ latex: # Information about where the book exists on the web repository: - url: https://github.com/ualibweb/UALIB_ScholarlyAPI_Cookbook # Online location of your book + url: https://github.com/UA-Libraries-Research-Data-Services/UALIB_ScholarlyAPI_Cookbook # Online location of your book # path_to_book: # Optional path to your book, relative to the repository root branch: main # Which branch of the repository should be used when creating links (optional) diff --git a/src/about/introduction.rst b/src/about/introduction.rst index 2484561..7e2f209 100644 --- a/src/about/introduction.rst +++ b/src/about/introduction.rst @@ -127,6 +127,6 @@ tutorial or document page. .. rubric:: References -.. [#ua_work] ``_ +.. [#ua_work] ``_ diff --git a/src/about/license-reuse.rst b/src/about/license-reuse.rst index a2e4782..a0d69b6 100644 --- a/src/about/license-reuse.rst +++ b/src/about/license-reuse.rst @@ -10,7 +10,7 @@ All code in this book is licensed with the permissive MIT license. Please feel f to reuse or adapt the code in your teaching and research. A copy of the license can be found in the GitHub repository: -``_ +``_ .. important:: @@ -23,7 +23,7 @@ can be found in the GitHub repository: If you reuse the code, attribution would be appreciated. Please link to the Cookbook and cite our manuscript: -Link to Cookbook: ``_ +Link to Cookbook: ``_ Citation: Scalfani, V. F.; Walker, K. W.; Simpson, L.; Fernandez, A. M.; Patel, V. D.; Ramig, A.; Gomes, C.; Moen, M. T.; Nguyen, A. M. Creating a Scholarly API Cookbook: Supporting Library Users with Programmatic Access to Information. *Issues in Science and Technology Librarianship*, **2023**, No. 104. ``_. diff --git a/src/shell/pubmed.rst b/src/shell/pubmed.rst index c88fc56..0050ffc 100644 --- a/src/shell/pubmed.rst +++ b/src/shell/pubmed.rst @@ -13,7 +13,7 @@ These recipe examples were tested on November 23, 2022 using GNOME Terminal in U .. note:: - This tutorial uses ``curl`` and ``jq`` for interacting with the PubChem API. You may also be interested in using the `NCBI EDirect command line program `_. We have workshop materials for EDirect with PubMed in our `UALIB Workshops repository `_. + This tutorial uses ``curl`` and ``jq`` for interacting with the PubChem API. You may also be interested in using the `NCBI EDirect command line program `_. We have workshop materials for EDirect with PubMed in our `UALIB Workshops repository `_. Program requirements ========================= From 2d80860998b4224500c89dc1a58a57de016d730c Mon Sep 17 00:00:00 2001 From: Avery Fernandez Date: Tue, 5 Nov 2024 08:04:46 -0600 Subject: [PATCH 2/3] Fix guides url --- src/about/introduction.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/about/introduction.rst b/src/about/introduction.rst index 7e2f209..0b5dee5 100644 --- a/src/about/introduction.rst +++ b/src/about/introduction.rst @@ -10,7 +10,7 @@ This is an open online book containing short scholarly API code examples (i.e., that demonstrate how to work with various scholarly web service APIs. It is part of the University of Alabama Libraries efforts to support `Research Data Services`_. -.. _Research Data Services: https://guides.lib.ua.edu/Data/ResearchDataServices/ +.. _Research Data Services: https://guides.lib.ua.edu/ResearchDataServices What should I be aware of before getting started? ************************************************* From 76d8ac59f2c8a299c47a1accb46530f075297503 Mon Sep 17 00:00:00 2001 From: Avery Fernandez Date: Tue, 5 Nov 2024 08:10:52 -0600 Subject: [PATCH 3/3] updated old cookbook urls --- src/python/nws.ipynb | 2 +- src/python/openalex.ipynb | 2 +- src/shell/pubchem.rst | 2 +- src/shell/z3950.rst | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/src/python/nws.ipynb b/src/python/nws.ipynb index 19fa56d..495ea51 100644 --- a/src/python/nws.ipynb +++ b/src/python/nws.ipynb @@ -87,7 +87,7 @@ "\n", "In order to obtain the forecast for a location, we must query that region's Weather Forecast Office using its code and the grid coordinates of the location. To determine these values for a location, we can query the `/points` endpoint.\n", "\n", - "*To see how to programmatically obtain the latititude and longitude of an address in the U.S., please see our [U.S. Census Geocoding cookbook tutorials](https://ualibweb.github.io/UALIB_ScholarlyAPI_Cookbook/src/overview/us-census-geocoding.html).*" + "*To see how to programmatically obtain the latititude and longitude of an address in the U.S., please see our [U.S. Census Geocoding cookbook tutorials](https://ua-libraries-research-data-services.github.io/UALIB_ScholarlyAPI_Cookbook/src/overview/us-census-geocoding.html).*" ] }, { diff --git a/src/python/openalex.ipynb b/src/python/openalex.ipynb index 2218f5a..7a4b333 100644 --- a/src/python/openalex.ipynb +++ b/src/python/openalex.ipynb @@ -1117,7 +1117,7 @@ "\n", "The OpenAlex API allows us to access the publications from an institution through its ROR ID. To find the ROR ID for an institution, we can search for the institution [here](https://ror.org/).\n", "\n", - "*To see how to programmatically obtain ROR IDs for institutions, please see our [Research Organization Registry cookbook tutorials](https://ualibweb.github.io/UALIB_ScholarlyAPI_Cookbook/src/overview/ror.html).*\n", + "*To see how to programmatically obtain ROR IDs for institutions, please see our [Research Organization Registry cookbook tutorials](https://ua-libraries-research-data-services.github.io/UALIB_ScholarlyAPI_Cookbook/src/overview/ror.html).*\n", "\n", "In this example, we'll look at the University of Alabama, which has the ROR identifier of https://ror.org/03xrrjk67" ] diff --git a/src/shell/pubchem.rst b/src/shell/pubchem.rst index 7b940dd..314debe 100644 --- a/src/shell/pubchem.rst +++ b/src/shell/pubchem.rst @@ -15,7 +15,7 @@ These recipe examples were tested on August 4, 2022 using GNOME Terminal (with B .. note:: - This tutorial uses ``curl`` and ``jq`` for interacting with the PubChem API. You may also be interested in using the `NCBI EDirect command line program `_. We have several tutorials for EDirect in our `EDirectChemInfo repository `_. + This tutorial uses ``curl`` and ``jq`` for interacting with the PubChem API. You may also be interested in using the `NCBI EDirect command line program `_. We have several tutorials for EDirect in our `EDirectChemInfo repository `_. Setup ============================================ diff --git a/src/shell/z3950.rst b/src/shell/z3950.rst index 123b243..4a54226 100644 --- a/src/shell/z3950.rst +++ b/src/shell/z3950.rst @@ -772,7 +772,7 @@ Since Index Data YAZ is a complete toolkit, it's possible to write your own cust As a result, we created a demonstration C program called ``z39-demo``: -https://github.com/ualibweb/z39-demo +https://github.com/UA-Libraries-Research-Data-Services/z39-demo ``z39-demo`` is a small command line program written in C that can run Z39.50 searches via an input query or an input file. By default ``z39-demo`` searches The University of Alabama library catalog,