ci.yml

name: ci
on: [push]
jobs:
  build:
    runs-on: ubuntu-22.04
    steps:
      - name: Download source repo
        uses: actions/checkout@v2
        with:
          submodules: recursive
      - name: Set up Python 3.11
        uses: actions/setup-python@v2
        with:
          python-version: 3.11
      - name: Install build dependencies
        run: |
          sudo apt update
          sudo apt install latexmk texlive-extra-utils texlive-latex-extra texlive-plain-generic biber texlive-bibtex-extra texlive-science texlive-font-utils texlive-pictures
          pip3 install tox==3.25.1
      - name: make
        run: make
      - name: make release
        run: make release
      - name: Upload installation artifact
        uses: actions/upload-artifact@v2
        with:
          name: targz
          path: PsN-*.tar.gz
      - name: Upload documentation artifact
        uses: actions/upload-artifact@v2
        with:
            name: docs
            path: doc/*.pdf

  get-nonmem:
    runs-on: ubuntu-20.04
    steps:
      - name: Cache NONMEM
        id: cache-nonmem
        uses: actions/cache@v2
        with:
            path: 751.zip
            key: nonmem-751
      - name: Download NONMEM
        if: steps.cache-nonmem.outputs.cache-hit != 'true'
        run: |
          sudo apt install lynx
          echo 'key /' >>lynxcmds
          echo 'key 7' >>lynxcmds
          echo 'key 5' >>lynxcmds
          echo 'key 1' >>lynxcmds
          echo 'key ^J' >>lynxcmds
          echo 'key ^J' >>lynxcmds
          echo 'key /' >>lynxcmds
          echo 'key z' >>lynxcmds
          echo 'key i' >>lynxcmds
          echo 'key p' >>lynxcmds
          echo 'key ^J' >>lynxcmds
          echo 'key d' >>lynxcmds
          echo 'key ^J' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key <delete>' >>lynxcmds
          echo 'key 7' >>lynxcmds
          echo 'key 5' >>lynxcmds
          echo 'key 1' >>lynxcmds
          echo 'key .' >>lynxcmds
          echo 'key z' >>lynxcmds
          echo 'key i' >>lynxcmds
          echo 'key p' >>lynxcmds
          echo 'key ^J' >>lynxcmds
          echo 'key Q' >>lynxcmds
          lynx -accept-all-cookies nonmem.iconplc.com -cmd_script=lynxcmds
      - name: Upload cache workaround
        uses: actions/upload-artifact@v2
        with:
          name: cache-workaround
          path: 751.zip

  test-ubuntu:
    needs: [build, get-nonmem]
    runs-on: ubuntu-22.04
    steps:
      - uses: actions/download-artifact@v2
        with:
          name: targz
      - name: Cache NONMEM
        id: cache-nonmem
        uses: actions/cache@v2
        with:
            path: 751.zip
            key: nonmem-751
      - name: Unzip NONMEM
        run: unzip -P $ZIP_KEY 751.zip
        env:
          ZIP_KEY: ${{secrets.ZIP_KEY}}
      - name: Install gfortran
        run: sudo apt install gfortran
      - name: Install NONMEM
        run: |
          cd nm751CD
          /bin/bash SETUP75 $(realpath .) $(realpath ../nm751) gfortran y ar same rec q
      - name: NONMEM license
        run: echo $LICENSE_KEY >nm751/license/nonmem.lic
        env:
          LICENSE_KEY: ${{secrets.LICENSE_KEY}}
      - name: Extract PsN
        run: tar -zxvf PsN-*.tar.gz
      - name: Install Perl dependencies
        run: |
          sudo cpan -T Math::Random
          sudo cpan -T MouseX::Params::Validate
          sudo cpan -T Math::SigFigs
      - name: Install Perl and R dependencies
        run: |
          sudo apt update
          sudo apt install -y libmath-random-free-perl libconfig-tiny-perl libstatistics-distributions-perl libfile-homedir-perl libfile-copy-recursive-perl libyaml-perl libcapture-tiny-perl libmath-matrixreal-perl libtest-exception-perl libmouse-perl libarchive-zip-perl libfile-copy-recursive-perl r-base pandoc libpq-dev libcairo2-dev libssl-dev libcurl4-openssl-dev libmariadb-dev libgmp-dev libmpfr-dev libxml2-dev libudunits2-dev libblas-dev liblapack-dev libmagick++-dev
      - name: Set up Python 3.11
        uses: actions/setup-python@v2
        with:
          python-version: '3.11'
      - name: Install PsN
        run: cd PsN-Source; sudo perl setup.pl -auto
      - name: Update psn.conf
        run: |
          export LIBPATH=$(find /usr/local/share/perl/ -type d -name '5.*')
          export PSNPATH=$(find $LIBPATH -type d -name 'PsN_[0-9]*')
          export NMPATH=$(realpath nm751)
          sudo sed -i "/\\[nm_versions\\]/a default=$NMPATH,7.5.1" $PSNPATH/psn.conf
      - name: Run unit tests
        run: |
          export LIBPATH=$(find /usr/local/share/perl/ -type d -name '5.*')
          export TESTPATH=$(find $LIBPATH -type d -name 'PsN_test_[0-9]*')
          cd $TESTPATH
          prove -r -j8 unit
      - name: Run system tests
        run: |
          export LIBPATH=$(find /usr/local/share/perl/ -type d -name '5.*')
          export TESTPATH=$(find $LIBPATH -type d -name 'PsN_test_[0-9]*')
          cd $TESTPATH
          prove -r -j3 system
      - name: Upload failed system test directories artifact
        uses: actions/upload-artifact@v2
        if: ${{ failure() }}
        with:
            name: system-tests-ubuntu
            path: /tmp/PsN-test_system*

  test-macos:
    needs: [build, get-nonmem]
    runs-on: macos-11
    steps:
      - name: Download installation tarball
        uses: actions/download-artifact@v2
        with:
          name: targz
      - name: Unpack installation tarball
        run: tar -zxvf PsN-*.tar.gz
      - name: Install system dependencies
        run: brew install cairo mariadb-connector-c openssl@1.1 coreutils gnu-sed r
      - name: Setup gfortran
        run: |
          sudo ln -s /usr/local/bin/gfortran-11 /usr/local/bin/gfortran
          sudo mkdir /usr/local/gfortran
          sudo ln -s /usr/local/Cellar/gcc@11/11.3.0_1/lib/gcc/11 /usr/local/gfortran/lib
      - name: Setup pandoc 
        uses: r-lib/actions/setup-pandoc@v1
      - name: Get NONMEM
        id: cache-nonmem
        uses: actions/cache@v2
        with:
            path: 751.zip
            key: nonmem-751
      - name: Unzip NONMEM
        run: unzip -P $ZIP_KEY 751.zip
        env:
          ZIP_KEY: ${{secrets.ZIP_KEY}}
      - name: Install NONMEM
        run: |
          cd nm751CD
          /bin/bash SETUP75 $(realpath .) $(realpath ../nm751) gfortran y ar same rec q
      - name: NONMEM license
        run: echo $LICENSE_KEY >nm751/license/nonmem.lic
        env:
          LICENSE_KEY: ${{secrets.LICENSE_KEY}}
      - name: Install Perl dependencies
        run: |
          sudo cpan -T Math::Random
          sudo cpan -T Math::Random::Free
          sudo cpan -T Math::MatrixReal
          sudo cpan -T MouseX::Params::Validate
          sudo cpan -T Archive::Zip
          sudo cpan -T Test::Exception
          sudo cpan -T Mouse
          sudo cpan -T YAML
          sudo cpan -T Capture::Tiny
          sudo cpan -T File::Copy::Recursive
          sudo cpan -T File::HomeDir
          sudo cpan -T Config::Tiny
          sudo cpan -T Math::SigFigs
          sudo cpan -T Statistics::Distributions
      - name: Install PsN
        run: cd PsN-Source; perl setup.pl -auto
      - name: Update psn.conf
        run: |
          export PSNPATH=$(find /usr/local/Cellar/perl/ -type d -name 'PsN_[0-9]*')
          export NMPATH=$(realpath nm751)
          sudo gsed -i "/\\[nm_versions\\]/a default=$NMPATH,7.5.1" $PSNPATH/psn.conf
      - name: Run unit tests
        run: |
          export TESTPATH=$(find /usr/local/Cellar/perl/ -type d -name 'PsN_test_[0-9]*')
          cd $TESTPATH
          prove -r -j8 unit
      - name: Save TMPDIR
        run: echo "TEMPDIR=$TMPDIR" >> $GITHUB_ENV
      - name: Run system tests
        run: |
          export TESTPATH=$(find /usr/local/Cellar/perl/ -type d -name 'PsN_test_[0-9]*')
          cd $TESTPATH
          prove -r -j4 system
      - name: Upload failed system test directories artifact
        uses: actions/upload-artifact@v2
        if: ${{ failure() }}
        with:
            name: system-tests-macos
            path: ${{ env.TEMPDIR }}/PsN-test_system*

  build-windows:
      needs: build
      runs-on: windows-2019
      steps:
        - name: Download installation tarball
          uses: actions/download-artifact@v2
          with:
            name: targz
        - name: Unpack installation tarball
          run: tar -zxvf PsN-*.tar.gz
          shell: bash
        - name: Download Strawberry Perl
          uses: suisei-cn/actions-download-file@v1
          with:
            url: http://strawberryperl.com/download/5.22.3.1/strawberry-perl-5.22.3.1-64bit-portable.zip
            target: downloads/
        - name: Download R
          uses: suisei-cn/actions-download-file@v1
          with:
            url: https://cran.r-project.org/bin/windows/base/old/4.0.3/R-4.0.3-win.exe
            target: downloads/
        - name: Download Python
          uses: suisei-cn/actions-download-file@v1
          with:
            url: https://github.com/winpython/winpython/releases/download/7.0.20231126final/Winpython64-3.11.6.0dot.exe
            target: downloads/
        - name: Download Pandoc
          uses: suisei-cn/actions-download-file@v1
          with:
            url: https://github.com/jgm/pandoc/releases/download/2.5/pandoc-2.5-windows-i386.zip
            target: downloads/
        - name: Show downloads
          run: dir downloads
          shell: cmd
        - name: Create installation directory
          run: |
             md -Name installer
             md -Name installer\strawberry
        - name: Extract winpython
          run: |
            copy downloads\Winpython64-3.11.6.0dot.exe installer
            cd installer
            Winpython64-3.11.6.0dot.exe -y
            del Winpython64-3.11.6.0dot.exe
            rename WPy64-31160 python
          shell: cmd
        - name: Install Pharmpy dependencies
          run:
              installer\python\python-3.11.6.amd64\python.exe -m pip install -r PsN-Source\requirements.txt
          shell: cmd
        - name: Install Pharmpy
          run: installer/python/python-3.11.6.amd64/python.exe -m pip install PsN-Source/pharmpy-core*.zip
          shell: bash
        - name: Move phampy executables
          run: |
            mv installer/python/python-3.11.6.amd64/Scripts/psn-pharmpy-wrapper.exe installer/python/python-3.11.6.amd64/
            mv installer/python/python-3.11.6.amd64/Scripts/pharmpy.exe installer/python/python-3.11.6.amd64/
          shell: bash
        - name: Extract Strawberry Perl
          run: tar -xf downloads/strawberry-perl-5.22.3.1-64bit-portable.zip -C installer\strawberry
        - name: Install Math::Random
          run: |
            set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH%
            cpanm Math::Random --notest
          shell: cmd
        - name: Install Math::Random::Free
          run: |
            set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH%
            cpanm Math::Random::Free --notest
          shell: cmd
        - name: Install Math::MatrixReal
          run: |
            set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH%
            cpanm Math::MatrixReal --notest
          shell: cmd
        - name: Install MouseX::Params::Validate
          run: |
            set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH%
            cpanm MouseX::Params::Validate --notest
          shell: cmd
        - name: Install Params::Validate
          run: |
            set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH%
            cpanm Params::Validate --notest
          shell: cmd
        - name: Install YAML
          run: |
            set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH%
            cpanm YAML --notest
          shell: cmd
        - name: Install Mouse
          run: |
            set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH%
            cpanm Mouse --notest
          shell: cmd
        - name: Install Capture::Tiny
          run: |
            set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH%
            cpanm Capture::Tiny --notest
          shell: cmd
        - name: Install File::Copy::Recursive
          run: |
            set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH%
            cpanm File::Copy::Recursive --notest
          shell: cmd
        - name: Install Config::Tiny
          run: |
            set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH%
            cpanm Config::Tiny --notest
          shell: cmd
        - name: Install File::HomeDir
          run: |
            set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH%
            cpanm File::HomeDir --notest
          shell: cmd
        - name: Install Math::SigFigs
          run: |
            set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH%
            cpanm Math::SigFigs --notest
          shell: cmd
        - name: Install Statistics::Distributions
          run: |
            set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH%
            cpanm Statistics::Distributions --notest
          shell: cmd
        - name: Install PsN
          run: |
              set PATH=%CD%\installer\strawberry\perl\site\bin;%CD%\installer\strawberry\perl\bin;%CD%\installer\strawberry\c\bin;%PATH%
              cd PsN-Source
              perl setup.pl relative -auto
          shell: cmd
        - name: Extract pandoc
          run: tar -xf downloads/pandoc-2.5-windows-i386.zip -C installer
        - name: Move pandoc
          run: mv installer/pandoc-2.5-windows-i386/pandoc.exe installer/strawberry/perl/bin
          shell: bash
        - name: Install Rtools40
          shell: pwsh
          run: |
            if(Test-path c:\\rtools40){
              echo "rtools40 is preinstalled"
            } else {
              choco install --confirm --no-progress --allow-downgrade rtools --version ${{inputs.version}}
            }
            echo "c:\\rtools40\\usr\\bin" >> $GITHUB_PATH
        - name: Install R
          run: downloads\R-4.0.3-win.exe /VERYSILENT /DIR="installer\R"
          shell: cmd
        - name: Install renv
          run: |
            md installer\Rlib
            installer\R\bin\x64\Rscript.exe -e "install.packages('renv', lib='installer/Rlib', repos='http://cran.us.r-project.org')"
          shell: cmd
        - name: Install R dependencies
          run: installer\R\bin\x64\Rscript.exe -e ".libPaths('installer/Rlib'); options(renv.config.copy.method='R'); options(renv.consent=TRUE); renv::settings$use.cache(FALSE); renv::restore(library='installer/Rlib', lockfile='PsN-Source/PsNR/renv.lock'); Sys.setenv(TZ='Europe/Berlin', LC_TIME='C', LC_MONETARY='C'); remotes::install_local('PsN-Source/PsNR', lib='installer/Rlib', repos=NULL, dependencies=F, INSTALL_opts=c('--no-multiarch'))"
          shell: cmd
        - name: Move dlls
          run: |
            mv installer/strawberry/c/bin/libxml2-2__.dll installer/strawberry/perl/bin/
            mv installer/strawberry/c/bin/liblzma-5__.dll installer/strawberry/perl/bin/
            mv installer/strawberry/c/bin/libiconv-2__.dll installer/strawberry/perl/bin/
            mv installer/strawberry/c/bin/zlib1__.dll installer/strawberry/perl/bin/
          shell: bash
        - name: Dir PsN
          run: dir installer\strawberry\perl\site\lib
          shell: cmd
        - name: Update psn.conf
          run: |
            export PSNPATH=$(find installer/strawberry/perl/site/lib/ -type d -name 'PsN_[0-9]*')
            echo PYTHON_PATH=../../../../../python/python-3.11.6.amd64 >tempfile
            echo R=../../../../../R/bin/R.exe >>tempfile
            echo R_LIB_PATH=../../../../../Rlib >>tempfile
            cat ${PSNPATH}/psn.conf >>tempfile
            mv tempfile ${PSNPATH}/psn.conf
          shell: bash
        - name: Clean R packages
          run: |
              echo 'import pathlib' >clean.py
              echo 'import shutil' >>clean.py
              echo 'import itertools' >>clean.py
              echo 'rlib_path = pathlib.Path("installer") / "Rlib"' >>clean.py
              echo 'rlibrary_path = pathlib.Path("installer") / "R" / "library"' >>clean.py
              echo 'for package in itertools.chain(rlib_path.iterdir(), rlibrary_path.iterdir()):' >>clean.py
              echo '    subdirs = ["html", "help", "doc", "libs/i386"]' >>clean.py
              echo '    for subdir in subdirs:' >>clean.py
              echo '        path = package / subdir' >>clean.py
              echo '        if path.exists():' >>clean.py
              echo '            shutil.rmtree(str(path))' >>clean.py
              installer/python/python-3.11.6.amd64/python.exe clean.py
          shell: bash
        - name: Remove unnecessary files
          run: |
              cd installer
              del pandoc-2.5-windows-i386\pandoc-citeproc.exe
              del pandoc-2.5-windows-i386\*.html
              del R\unins000.dat
              del R\unins000.exe
              rmdir R\tests /s /q
              rmdir R\doc /s /q
              rmdir R\Tcl /s /q
              rmdir R\modules\i386 /s /q
              rmdir R\etc\i386 /s /q
              rmdir R\bin\i386 /s /q
              del R\bin\config.sh
              del strawberry\README.txt
              del strawberry\DISTRIBUTIONS.txt
              rmdir strawberry\win32 /s /q
              rmdir strawberry\data /s /q
              rmdir strawberry\cpan /s /q
              del strawberry\c\bin\c++.exe
              del strawberry\c\bin\c++filt.exe
              del strawberry\c\bin\cpp.exe
              del strawberry\c\bin\g++.exe
              del strawberry\c\bin\x86_64-w64-mingw32-c++.exe
              del strawberry\c\bin\x86_64-w64-mingw32-g++.exe
              del python\*.exe
              rmdir python\notebooks /s /q
              rmdir python\scripts /s /q
              rmdir python\python-3.11.6.amd64\tcl /s /q
              rmdir python\python-3.11.6.amd64\share /s /q
              rmdir python\python-3.11.6.amd64\Tools /s /q
              rmdir python\python-3.11.6.amd64\Doc /s /q
              rmdir python\python-3.11.6.amd64\Scripts /s /q
              del python\python-3.11.6.amd64\NEWS.txt
              rmdir python\python-3.11.6.amd64\libs /s /q
              rmdir python\python-3.11.6.amd64\include /s /q
          shell: cmd
        - name: Show installer directory
          run: dir installer
          shell: cmd
        - name: Create installation package
          run: |
            export filename=`ls PsN-*.tar.gz -1`
            export dirname="${filename%.tar.gz}"
            export packagename="${filename%.tar.gz}-windows-64bit.zip"
            mv installer $dirname
            7z a $packagename $dirname
            echo "packagename=${packagename}" >> $GITHUB_ENV
          shell: bash
        - name: Upload Windows package
          uses: actions/upload-artifact@v2
          with:
            name: win-installer
            path: ${{ env.packagename }}

  test-windows:
    needs: [build-windows, get-nonmem]
    runs-on: windows-2019
    steps:
      - name: Download installation tarball
        uses: actions/download-artifact@v2
        with:
            name: win-installer
      - name: Unzip installer
        run: 7z x *.zip
        shell: cmd
      - name: Get NONMEM
        uses: actions/download-artifact@v2
        with:
          name: cache-workaround
      - name: Unzip NONMEM
        run: 7z x 751.zip -p%ZIP_KEY%
        env:
          ZIP_KEY: ${{secrets.ZIP_KEY}}
        shell: cmd
      - name: NONMEM license
        run: echo $LICENSE_KEY >nm751CD/nonmem.lic
        env:
          LICENSE_KEY: ${{secrets.LICENSE_KEY}}
        shell: bash
      - name: Install NONMEM
        run: |
          set PATH=installer\strawberry\c\bin\;%PATH%
          set INSTALLDIR=%CD%\nm751
          cd nm751CD
          SETUP75.bat %CD% %INSTALLDIR% gfortran y ar same rec q
        shell: cmd
      - name: Update psn.conf
        run: |
          export PSNPATH=$(find . -type d -name 'PsN_[0-9]*')
          export NMPATH=$(realpath nm751)
          export NMPATH=D:${NMPATH:2}
          sed -i "/\\[nm_versions\\]/a default=$NMPATH,7.5.1" $PSNPATH/psn.conf
          cat $PSNPATH/psn.conf
        shell: bash
      - name: Find tests
        run: |
          export PSNPATH=$(find $PWD -maxdepth 1 -type d -name 'PsN-*')
          export PSNPATH=D:${PSNPATH:2}
          export TESTPATH=$(find $PSNPATH -type d -name 'PsN_test_[0-9]*')
          export TESTPATH=D:${TESTPATH:2}
          export LIBPATH=$(find $PSNPATH -type d -name 'PsN_[0-9]*')
          export LIBPATH=D:${LIBPATH:2}
          echo PSNPATH=$PSNPATH
          echo TESTPATH=$TESTPATH
          echo LIBPATH=$LIBPATH
          echo "PSNPATH=$PSNPATH" >> $GITHUB_ENV
          echo "TESTPATH=$TESTPATH" >> $GITHUB_ENV
          echo "LIBPATH=$LIBPATH" >> $GITHUB_ENV
        shell: bash
      - name: Edit test paths
        run: |
          cd $TESTPATH
          echo 'found_libpath = False' >edit.py
          echo 'found_path = False' >>edit.py
          echo 'with open("includes.pm", "r") as sh:' >>edit.py
          echo '    with open("tempy", "w") as dh:' >>edit.py
          echo '        for line in sh:' >>edit.py
          echo '            stripped = line.strip()' >>edit.py
          echo '            if not found_libpath and stripped.startswith("my $libpath"):' >>edit.py
          echo "                path = '$LIBPATH/'" >>edit.py
          echo "                print(f\"my \$libpath = '{path}';\", file=dh)" >>edit.py 
          echo '                found_libpath = True' >>edit.py
          echo '            elif not found_path and stripped.startswith("our $path"):' >>edit.py
          echo "                path = \"$PSNPATH/strawberry/perl/bin/\"" >>edit.py
          echo "                print(f\"our \$path = '{path}';\", file=dh)" >>edit.py 
          echo '                found_path = True' >>edit.py
          echo '            else:' >>edit.py
          echo '                dh.write(line)' >>edit.py
          ../../../../../python/python-3.11.6.amd64/python.exe edit.py
          rm includes.pm
          mv tempy includes.pm
          cat edit.py
          cat includes.pm
        shell: bash
      - name: Run unit tests
        run: |
          echo %PSNPATH%
          echo %TESTPATH%
          set PATH=%PSNPATH%\strawberry\perl\bin;%PSNPATH%\strawberry\c\bin;%PATH%
          where prove
          cd %TESTPATH%
          prove -r -j8 unit
        shell: cmd
      - name: Save TEMP
        run: |
            setlocal DisableDelayedExpansion
            echo TEMPDIR=%TEMP%>> %GITHUB_ENV%
            endlocal
        shell: cmd
      - name: Run system tests
        run: |
          set PATH=%PSNPATH%\strawberry\perl\bin;%PSNPATH%\strawberry\c\bin;%PATH%
          cd %TESTPATH%
          prove -r -j3 system
        shell: cmd
      - name: Upload failed system test directories artifact
        uses: actions/upload-artifact@v2
        if: ${{ failure() }}
        with:
            name: system-tests-windows
            path: ${{ env.TEMPDIR }}\PsN-test_system*

  release:
    needs: [test-windows, test-macos, test-ubuntu]
    runs-on: ubuntu-20.04
    steps:
      - name: Get PsN installer
        uses: actions/download-artifact@v2
        with:
          name: targz
      - name: Get docs
        uses: actions/download-artifact@v2
        with:
          name: docs
      - name: Get Windows installer
        uses: actions/download-artifact@v2
        with:
          name: win-installer
      - name: Release
        uses: softprops/action-gh-release@v1
        if: startsWith(github.ref, 'refs/tags/')
        with:
            files: |
                PsN*.tar.gz
                PsN*.zip
                *.pdf
        env:
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}