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run_tests_linux.yml
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###
# Build hdf4, hdf5 dependencies and cache them in a combined directory.
###
name: Run netCDF-Fortran Linux tests
on: [pull_request, workflow_dispatch]
concurrency:
group: ${{ github.workflow}}-${{ github.head_ref }}
cancel-in-progress: true
jobs:
build-deps:
runs-on: ubuntu-latest
strategy:
matrix:
hdf5: [ 1.12.2 ]
netcdf: [ v4.7.4, v4.8.1, v4.9.0, main ]
steps:
- uses: actions/checkout@v4
- name: Install System dependencies
shell: bash -l {0}
run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev gfortran
###
# Set Environmental Variables
###
- run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/include" >> $GITHUB_ENV
- run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV
- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV
###
# Installing libhdf4 and libhdf5
###
- name: Cache libhdf5-${{ matrix.hdf5 }}-${{ matrix.netcdf }}
id: cache-hdf5
uses: actions/cache@v4
with:
path: ~/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}
key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}
- name: Build libhdf5-${{ matrix.hdf5 }}-${{ matrix.netcdf }}
if: steps.cache-hdf5.outputs.cache-hit != 'true'
run: |
pushd $HOME
wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$(echo ${{ matrix.hdf5 }} | cut -d. -f 1,2)/hdf5-${{ matrix.hdf5 }}/src/hdf5-${{ matrix.hdf5 }}.tar.bz2
tar -jxf hdf5-${{ matrix.hdf5 }}.tar.bz2
pushd hdf5-${{ matrix.hdf5 }}
./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} --enable-hl --with-szlib
make -j
make install -j
popd
if [[ ${{ matrix.netcdf }} != "main" ]]; then
git clone -b ${{ matrix.netcdf}} https://github.com/Unidata/netcdf-c
pushd netcdf-c
autoreconf -if
CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}
make -j install
popd
fi
popd
build-deps-par:
runs-on: ubuntu-latest
strategy:
matrix:
hdf5: [ 1.12.2 ]
netcdf: [ v4.7.4, v4.8.1, v4.9.0, main ]
steps:
- uses: actions/checkout@v4
- name: Install System dependencies
shell: bash -l {0}
run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev gfortran mpich libmpich-dev
###
# Set Environmental Variables
###
- run: echo "CC=mpicc" >> $GITHUB_ENV
- run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/include" >> $GITHUB_ENV
- run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV
- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV
###
# Installing libhdf4 and libhdf5
###
- name: Cache libhdf5-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-par
id: cache-hdf5-par
uses: actions/cache@v4
with:
path: ~/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}
key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-par
- name: Build libhdf5-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-par
if: steps.cache-hdf5-par.outputs.cache-hit != 'true'
run: |
pushd $HOME
wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$(echo ${{ matrix.hdf5 }} | cut -d. -f 1,2)/hdf5-${{ matrix.hdf5 }}/src/hdf5-${{ matrix.hdf5 }}.tar.bz2 &> /dev/null
tar -jxf hdf5-${{ matrix.hdf5 }}.tar.bz2
pushd hdf5-${{ matrix.hdf5 }}
./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} --enable-hl --with-szlib --enable-parallel
make -j
make install -j
popd
if [[ ${{ matrix.netcdf }} != "main" ]]; then
git clone -b ${{ matrix.netcdf}} https://github.com/Unidata/netcdf-c
pushd netcdf-c
autoreconf -if
CC=${CC} CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}
make -j install
popd
fi
popd
nf-autotools:
needs: build-deps
runs-on: ubuntu-latest
strategy:
matrix:
hdf5: [ 1.12.2 ]
netcdf: [ v4.7.4, v4.8.1, v4.9.0, main ]
steps:
- uses: actions/checkout@v4
- name: Install System dependencies
shell: bash -l {0}
run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev libzstd-dev
###
# Set Environmental Variables
###
- run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/include" >> $GITHUB_ENV
- run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV
- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV
- run: echo "HDF5_PLUGIN_PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV
- run: echo "HDF5_PLUGIN_DIR=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV
###
# Fetch Cache
###
- name: Fetch HDF Cache
id: cache-hdf
uses: actions/cache@v4
with:
path: ~/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}
key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}
- name: Check Cache
shell: bash -l {0}
run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} && ls ${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf}}/lib
###
# Configure and build
###
- name: Build netcdf-c if main
run: |
pushd $HOME
git clone -b ${{ matrix.netcdf}} https://github.com/Unidata/netcdf-c
pushd netcdf-c
autoreconf -if
CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} --with-plugin-dir=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib
make -j install
popd
popd
if: ${{ matrix.netcdf }} == "main"
- name: Run autoconf
shell: bash -l {0}
run: autoreconf -if
- name: Configure
shell: bash -l {0}
run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure
- name: Look at config.log if error
shell: bash -l {0}
run: cat config.log
if: ${{ failure() }}
- name: Print Summary
shell: bash -l {0}
run: cat libnetcdff.settings
- name: Build Library and Utilities
shell: bash -l {0}
run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j
if: ${{ success() }}
- name: Build Tests
shell: bash -l {0}
run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check TESTS="" -j
if: ${{ success() }}
- name: Run Tests
shell: bash -l {0}
run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check -j
if: ${{ success() }}
#- name: Make Distcheck
# shell: bash -l {0}
# run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make distcheck -j
nf-autotools-par:
needs: build-deps-par
runs-on: ubuntu-latest
strategy:
matrix:
hdf5: [ 1.12.2 ]
netcdf: [ v4.7.4, v4.8.1, v4.9.0, main ]
steps:
- uses: actions/checkout@v4
- name: Install System dependencies
shell: bash -l {0}
run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev mpich libmpich-dev libzstd-dev
###
# Set Environmental Variables
###
- run: echo "CC=mpicc" >> $GITHUB_ENV
- run: echo "FC=mpifort" >> $GITHUB_ENV
- run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/include" >> $GITHUB_ENV
- run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV
- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV
- run: echo "HDF5_PLUGIN_PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV
- run: echo "HDF5_PLUGIN_DIR=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV
###
# Fetch Cache
###
- name: Fetch HDF Cache
id: cache-hdf-par
uses: actions/cache@v4
with:
path: ~/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}
key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-par
- name: Check Cache
shell: bash -l {0}
run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} && ls ${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf}}/lib
###
# Configure and build
###
- name: Build netcdf-c if main
run: |
pushd $HOME
git clone -b ${{ matrix.netcdf}} https://github.com/Unidata/netcdf-c
pushd netcdf-c
autoreconf -if
CC=${CC} CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} --with-plugin-dir=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib
make -j install
popd
popd
if: ${{ matrix.netcdf }} == "main"
- name: Run autoconf
shell: bash -l {0}
run: autoreconf -if
- name: Configure
shell: bash -l {0}
run: CC=${CC} CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure --enable-parallel-tests
- name: Look at config.log if error
shell: bash -l {0}
run: cat config.log
if: ${{ failure() }}
- name: Print Summary
shell: bash -l {0}
run: cat libnetcdff.settings
- name: Build Library and Utilities
shell: bash -l {0}
run: CC=${CC} CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j
if: ${{ success() }}
- name: Build Tests
shell: bash -l {0}
run: CC=${CC} CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check TESTS="" -j
if: ${{ success() }}
- name: Run Tests
shell: bash -l {0}
run: CC=${CC} CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check -j
if: ${{ success() }}
#- name: Make Distcheck
# shell: bash -l {0}
# run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make distcheck -j
nf-cmake:
needs: build-deps
runs-on: ubuntu-latest
strategy:
matrix:
hdf5: [ 1.12.2 ]
netcdf: [ v4.7.4, v4.8.1, v4.9.0, main ]
steps:
- uses: actions/checkout@v4
- name: Install System dependencies
shell: bash -l {0}
run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev libzstd-dev
###
# Set Environmental Variables
###
- run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/include" >> $GITHUB_ENV
- run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV
- run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV
- run: echo "CMAKE_PREFIX_PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf}}" >> $GITHUB_ENV
- run: echo "HDF5_PLUGIN_PATH=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV
- run: echo "HDF5_PLUGIN_DIR=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib" >> $GITHUB_ENV
###
# Fetch Cache
###
- name: Fetch HDF Cache
id: cache-hdf5
uses: actions/cache@v4
with:
path: ~/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}
key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}
- name: Check Cache
shell: bash -l {0}
run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} && ls ${HOME}/environments/${{ matrix.hdf5 }}-${{matrix.netcdf}}/lib
###
# Configure and build
###
- name: Build netcdf-c if main
run: |
pushd $HOME
git clone -b ${{ matrix.netcdf}} https://github.com/Unidata/netcdf-c
pushd netcdf-c
autoreconf -if
CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }} --with-plugin-dir=${HOME}/environments/${{ matrix.hdf5 }}-${{ matrix.netcdf }}/lib
make -j install
popd
popd
if: ${{ matrix.netcdf }} == "main"
- name: Perform out-of-directory build
shell: bash -l {0}
run: LD_LIBRARY_PATH=${LD_LIBRARY_PATH} cmake -Bbuild -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH}
- name: Print Summary
shell: bash -l {0}
run: cat build/libnetcdff.settings
- name: Build All
shell: bash -l {0}
run: LD_LIBRARY_PATH=${LD_LIBRARY_PATH} cmake --build build --parallel
if: ${{ success() }}
- name: Run Tests
shell: bash -l {0}
run: LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest --test-dir build
if: ${{ success() }}
- name: Look at LastTest.log if error
shell: bash -l {0}
run: |
cat build/Testing/Temporary/LastTest.log
LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest --test-dir build --rerun-failed --output-on-failure
if: ${{ failure() }}