interstellar_data_env.yml

name: interstellar_data

channels:
- conda-forge

dependencies:
- conda-forge::python=3.8
- conda-forge::ipykernel
- conda-forge::jupyter
- conda-forge::nbconvert=6.4.4
- conda-forge::nb_conda_kernels
- conda-forge::pip
- conda-forge::numpy
- conda-forge::matplotlib
- conda-forge::pandas
- conda-forge::openjdk
- conda-forge::scikit-learn
- conda-forge::mahotas
- conda-forge::gtk2
# these are strict because that is how it is on the CellProfiler wiki
# had to move up version for Jinja2 to use jupyter nbconvert
- conda-forge::Jinja2=3.0.3
- conda-forge::inflect=5.3.0
- conda-forge::wxpython=4.1.0
- conda-forge::sentry-sdk=0.18.0
- conda-forge::mysqlclient=1.4.4
- pip:
    - cellprofiler==4.2.4
    - git+https://github.com/broadinstitute/pe2loaddata.git@0426dd6b9d8b3242294a6fbdef7c4e1ee762a4cc
    - git+https://github.com/cytomining/pycytominer@7e571322d211f66e716bf135c8b52898556fb960
    - cytotable==0.0.6