From e237adf6c5e375782af44fe067f2f0f3d340b9bb Mon Sep 17 00:00:00 2001
From: Minghao Liu <mhliu0001@sina.com>
Date: Wed, 20 Dec 2023 10:36:28 -0500
Subject: [PATCH] Fix S1/S2 correction and gas gain when simulating S1/S2PE
 (#122)

* Separate correction for S1PE/S2PE and cS1/cS2 using true/reconstructed position

* Add gas gain (x,y) dependence when simulating S2PE

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* Fix parameter list of S2PE

* change gas gain map to relative map

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* add back gas gain to parameter

* modify the structure a bit

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* debug

* Update datastructure

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Zihao Xu <zihao.xu@columbia.edu>
Co-authored-by: Dacheng Xu <dx2227@columbia.edu>
---
 appletree/maps/_gas_gain_relative.json |    1 +
 appletree/plugins/detector.py          |   63 +-
 appletree/plugins/reconstruction.py    |   38 +
 notebooks/5. datastructure.ipynb       | 2117 +++++++++++++-----------
 4 files changed, 1235 insertions(+), 984 deletions(-)
 create mode 100644 appletree/maps/_gas_gain_relative.json

diff --git a/appletree/maps/_gas_gain_relative.json b/appletree/maps/_gas_gain_relative.json
new file mode 100644
index 00000000..2c6ef063
--- /dev/null
+++ b/appletree/maps/_gas_gain_relative.json
@@ -0,0 +1 @@
+{"coordinate_lowers": [-70, -70], "coordinate_uppers": [70, 70], "coordinate_type": "regbin", "coordinate_name": ["x", "y"], "map": [[1.0, 1.0, 1.0, 1.0, 1.0], [1.0, 1.0, 1.0, 1.0, 1.0], [1.0, 1.0, 1.0, 1.0, 1.0], [1.0, 1.0, 1.0, 1.0, 1.0], [1.0, 1.0, 1.0, 1.0, 1.0]]}
diff --git a/appletree/plugins/detector.py b/appletree/plugins/detector.py
index 0051744a..5c41507f 100644
--- a/appletree/plugins/detector.py
+++ b/appletree/plugins/detector.py
@@ -13,52 +13,50 @@
 @export
 @takes_config(
     Map(
-        name="s1_correction",
+        name="s1_lce",
         default="_s1_correction.json",
-        help="S1 light collection efficiency correction",
+        help="S1 light collection efficiency",
     ),
 )
-class S1Correction(Plugin):
-    depends_on = ["rec_x", "rec_y", "rec_z"]
-    provides = ["s1_correction"]
+class S1LCE(Plugin):
+    depends_on = ["x", "y", "z"]
+    provides = ["s1_lce"]
 
     @partial(jit, static_argnums=(0,))
-    def simulate(self, key, parameters, rec_x, rec_y, rec_z):
-        pos = jnp.stack([rec_x, rec_y, rec_z]).T
-        s1_correction = self.s1_correction.apply(pos)
-        return key, s1_correction
+    def simulate(self, key, parameters, x, y, z):
+        pos_true = jnp.stack([x, y, z]).T
+        s1_lce = self.s1_lce.apply(pos_true)
+        return key, s1_lce
 
 
 @export
 @takes_config(
     Map(
-        name="s2_correction",
+        name="s2_lce",
         default="_s2_correction.json",
-        help="S2 light collection efficiency correction",
+        help="S2 light collection efficiency",
     ),
 )
-class S2Correction(Plugin):
-    depends_on = ["rec_x", "rec_y"]
-    provides = ["s2_correction"]
+class S2LCE(Plugin):
+    depends_on = ["x", "y"]
+    provides = ["s2_lce"]
 
     @partial(jit, static_argnums=(0,))
-    def simulate(self, key, parameters, rec_x, rec_y):
-        pos = jnp.stack([rec_x, rec_y]).T
-        s2_correction = self.s2_correction.apply(pos)
-        return key, s2_correction
+    def simulate(self, key, parameters, x, y):
+        pos_true = jnp.stack([x, y]).T
+        s2_lce = self.s2_lce.apply(pos_true)
+        return key, s2_lce
 
 
 @export
 class PhotonDetection(Plugin):
-    depends_on = ["num_photon", "s1_correction"]
+    depends_on = ["num_photon", "s1_lce"]
     provides = ["num_s1_phd"]
     parameters = ("g1", "p_dpe")
 
     @partial(jit, static_argnums=(0,))
-    def simulate(self, key, parameters, num_photon, s1_correction):
-        g1_true_no_dpe = jnp.clip(
-            parameters["g1"] * s1_correction / (1.0 + parameters["p_dpe"]), 0, 1.0
-        )
+    def simulate(self, key, parameters, num_photon, s1_lce):
+        g1_true_no_dpe = jnp.clip(parameters["g1"] * s1_lce / (1.0 + parameters["p_dpe"]), 0, 1.0)
         key, num_s1_phd = randgen.binomial(key, g1_true_no_dpe, num_photon)
         return key, num_s1_phd
 
@@ -104,21 +102,28 @@ def simulate(self, key, parameters, num_electron, drift_survive_prob):
         return key, num_electron_drifted
 
 
+@takes_config(
+    Map(
+        name="gas_gain_relative",
+        default="_gas_gain_relative.json",
+        help="Gas gain as a function of (x, y) / mean gas gain",
+    ),
+)
 @export
 class S2PE(Plugin):
-    depends_on = ["num_electron_drifted", "s2_correction"]
+    depends_on = ["num_electron_drifted", "s2_lce", "x", "y"]
     provides = ["num_s2_pe"]
     parameters = ("g2", "gas_gain")
 
     @partial(jit, static_argnums=(0,))
-    def simulate(self, key, parameters, num_electron_drifted, s2_correction):
-        extraction_eff = parameters["g2"] / parameters["gas_gain"]
-        g2_true = parameters["g2"] * s2_correction
-        gas_gain_true = g2_true / extraction_eff
+    def simulate(self, key, parameters, num_electron_drifted, s2_lce, x, y):
+        pos_true = jnp.stack([x, y]).T
+        gas_gain = parameters["gas_gain"] * self.gas_gain_relative.apply((pos_true))
+        extraction_eff = parameters["g2"] * s2_lce / gas_gain
 
         key, num_electron_extracted = randgen.binomial(key, extraction_eff, num_electron_drifted)
 
-        mean_s2_pe = num_electron_extracted * gas_gain_true
+        mean_s2_pe = num_electron_extracted * gas_gain
         key, num_s2_pe = randgen.truncate_normal(key, mean_s2_pe, jnp.sqrt(mean_s2_pe), vmin=0)
 
         return key, num_s2_pe
diff --git a/appletree/plugins/reconstruction.py b/appletree/plugins/reconstruction.py
index 47c6ac0b..92c1919c 100644
--- a/appletree/plugins/reconstruction.py
+++ b/appletree/plugins/reconstruction.py
@@ -69,6 +69,44 @@ def simulate(self, key, parameters, num_s2_pe):
         return key, s2_area
 
 
+@export
+@takes_config(
+    Map(
+        name="s1_correction",
+        default="_s1_correction.json",
+        help="S1 xyz correction on reconstructed positions",
+    ),
+)
+class S1Correction(Plugin):
+    depends_on = ["rec_x", "rec_y", "rec_z"]
+    provides = ["s1_correction"]
+
+    @partial(jit, static_argnums=(0,))
+    def simulate(self, key, parameters, rec_x, rec_y, rec_z):
+        pos_rec = jnp.stack([rec_x, rec_y, rec_z]).T
+        s1_correction = self.s1_correction.apply(pos_rec)
+        return key, s1_correction
+
+
+@export
+@takes_config(
+    Map(
+        name="s2_correction",
+        default="_s2_correction.json",
+        help="S2 xy correction on constructed positions",
+    ),
+)
+class S2Correction(Plugin):
+    depends_on = ["rec_x", "rec_y"]
+    provides = ["s2_correction"]
+
+    @partial(jit, static_argnums=(0,))
+    def simulate(self, key, parameters, rec_x, rec_y):
+        pos_rec = jnp.stack([rec_x, rec_y]).T
+        s2_correction = self.s2_correction.apply(pos_rec)
+        return key, s2_correction
+
+
 @export
 class cS1(Plugin):
     depends_on = ["s1_area", "s1_correction"]
diff --git a/notebooks/5. datastructure.ipynb b/notebooks/5. datastructure.ipynb
index 279ad6f0..697f4b2d 100644
--- a/notebooks/5. datastructure.ipynb	
+++ b/notebooks/5. datastructure.ipynb	
@@ -14,13 +14,28 @@
    "id": "5be47339-4fc8-41bb-8da2-aa2f88533939",
    "metadata": {},
    "outputs": [
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "No GPU/TPU found, falling back to CPU. (Set TF_CPP_MIN_LOG_LEVEL=0 and rerun for more info.)\n"
+     ]
+    },
     {
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "Using Normal as an approximation of Binomial\n",
+      "Using accurate Binomial, not Normal approximation\n",
       "Using aptext package from https://github.com/XENONnT/applefiles\n"
      ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "/home/xudc/appletree/appletree/__init__.py:44: UserWarning: You are running appletree on CPU, which usually results in low performance.\n",
+      "  warn(warning)\n"
+     ]
     }
    ],
    "source": [
@@ -93,15 +108,15 @@
     {
      "data": {
       "image/svg+xml": [
-       "<svg xmlns=\"http://www.w3.org/2000/svg\" xmlns:xlink=\"http://www.w3.org/1999/xlink\" width=\"818pt\" height=\"908pt\" viewBox=\"0.00 0.00 818.02 908.00\">\n",
-       "<g id=\"graph0\" class=\"graph\" transform=\"scale(1 1) rotate(0) translate(4 904)\">\n",
-       "<polygon fill=\"white\" stroke=\"transparent\" points=\"-4,4 -4,-904 814.02,-904 814.02,4 -4,4\"/>\n",
+       "<svg xmlns=\"http://www.w3.org/2000/svg\" xmlns:xlink=\"http://www.w3.org/1999/xlink\" width=\"917pt\" height=\"764pt\" viewBox=\"0.00 0.00 917.21 764.00\">\n",
+       "<g id=\"graph0\" class=\"graph\" transform=\"scale(1 1) rotate(0) translate(4 760)\">\n",
+       "<polygon fill=\"white\" stroke=\"transparent\" points=\"-4,4 -4,-760 913.21,-760 913.21,4 -4,4\"/>\n",
        "<!-- cs1 -->\n",
        "<g id=\"node1\" class=\"node\">\n",
        "<title>cs1</title>\n",
        "<g id=\"a_node1\"><a xlink:href=\"#cs1\" xlink:title=\"cs1\">\n",
-       "<ellipse fill=\"white\" stroke=\"black\" cx=\"439.34\" cy=\"-810\" rx=\"27\" ry=\"18\"/>\n",
-       "<text text-anchor=\"middle\" x=\"439.34\" y=\"-806.3\" font-family=\"Times,serif\" font-size=\"14.00\">cs1</text>\n",
+       "<ellipse fill=\"white\" stroke=\"black\" cx=\"549.49\" cy=\"-666\" rx=\"27\" ry=\"18\"/>\n",
+       "<text text-anchor=\"middle\" x=\"549.49\" y=\"-662.3\" font-family=\"Times,serif\" font-size=\"14.00\">cs1</text>\n",
        "</a>\n",
        "</g>\n",
        "</g>\n",
@@ -109,613 +124,673 @@
        "<g id=\"node2\" class=\"node\">\n",
        "<title>s1_area</title>\n",
        "<g id=\"a_node2\"><a xlink:href=\"#s1-area\" xlink:title=\"s1_area\">\n",
-       "<ellipse fill=\"white\" stroke=\"black\" cx=\"341.34\" cy=\"-738\" rx=\"46.29\" ry=\"18\"/>\n",
-       "<text text-anchor=\"middle\" x=\"341.34\" y=\"-734.3\" font-family=\"Times,serif\" font-size=\"14.00\">s1_area</text>\n",
+       "<ellipse fill=\"white\" stroke=\"black\" cx=\"410.49\" cy=\"-594\" rx=\"37.89\" ry=\"18\"/>\n",
+       "<text text-anchor=\"middle\" x=\"410.49\" y=\"-590.3\" font-family=\"Times,serif\" font-size=\"14.00\">s1_area</text>\n",
        "</a>\n",
        "</g>\n",
        "</g>\n",
        "<!-- cs1&#45;&gt;s1_area -->\n",
        "<g id=\"edge1\" class=\"edge\">\n",
        "<title>cs1-&gt;s1_area</title>\n",
-       "<path fill=\"none\" stroke=\"black\" d=\"M421.37,-796.16C407.25,-786.08 387.3,-771.83 370.85,-760.08\"/>\n",
-       "<polygon fill=\"black\" stroke=\"black\" points=\"372.79,-757.16 362.62,-754.19 368.72,-762.85 372.79,-757.16\"/>\n",
+       "<path fill=\"none\" stroke=\"black\" d=\"M528.68,-654.52C506.56,-643.38 471.21,-625.57 444.92,-612.34\"/>\n",
+       "<polygon fill=\"black\" stroke=\"black\" points=\"446.2,-609.06 435.69,-607.69 443.05,-615.31 446.2,-609.06\"/>\n",
        "</g>\n",
        "<!-- s1_correction -->\n",
-       "<g id=\"node12\" class=\"node\">\n",
+       "<g id=\"node17\" class=\"node\">\n",
        "<title>s1_correction</title>\n",
-       "<g id=\"a_node12\"><a xlink:href=\"#s1-correction\" xlink:title=\"s1_correction\">\n",
-       "<ellipse fill=\"white\" stroke=\"black\" cx=\"472.34\" cy=\"-522\" rx=\"73.39\" ry=\"18\"/>\n",
-       "<text text-anchor=\"middle\" x=\"472.34\" y=\"-518.3\" font-family=\"Times,serif\" font-size=\"14.00\">s1_correction</text>\n",
+       "<g id=\"a_node17\"><a xlink:href=\"#s1-correction\" xlink:title=\"s1_correction\">\n",
+       "<ellipse fill=\"white\" stroke=\"black\" cx=\"633.49\" cy=\"-522\" rx=\"59.29\" ry=\"18\"/>\n",
+       "<text text-anchor=\"middle\" x=\"633.49\" y=\"-518.3\" font-family=\"Times,serif\" font-size=\"14.00\">s1_correction</text>\n",
        "</a>\n",
        "</g>\n",
        "</g>\n",
        "<!-- cs1&#45;&gt;s1_correction -->\n",
-       "<g id=\"edge41\" class=\"edge\">\n",
+       "<g id=\"edge44\" class=\"edge\">\n",
        "<title>cs1-&gt;s1_correction</title>\n",
-       "<path fill=\"none\" stroke=\"black\" d=\"M441.31,-791.97C446.82,-744.19 462.46,-608.62 469.2,-550.27\"/>\n",
-       "<polygon fill=\"black\" stroke=\"black\" points=\"472.68,-550.64 470.35,-540.31 465.72,-549.84 472.68,-550.64\"/>\n",
+       "<path fill=\"none\" stroke=\"black\" d=\"M558.97,-648.99C573.37,-624.64 600.92,-578.06 618.19,-548.87\"/>\n",
+       "<polygon fill=\"black\" stroke=\"black\" points=\"621.33,-550.44 623.4,-540.06 615.3,-546.88 621.33,-550.44\"/>\n",
        "</g>\n",
        "<!-- num_s1_phd -->\n",
        "<g id=\"node3\" class=\"node\">\n",
        "<title>num_s1_phd</title>\n",
        "<g id=\"a_node3\"><a xlink:href=\"#num-s1-phd\" xlink:title=\"num_s1_phd\">\n",
-       "<ellipse fill=\"white\" stroke=\"black\" cx=\"292.34\" cy=\"-594\" rx=\"68.49\" ry=\"18\"/>\n",
-       "<text text-anchor=\"middle\" x=\"292.34\" y=\"-590.3\" font-family=\"Times,serif\" font-size=\"14.00\">num_s1_phd</text>\n",
+       "<ellipse fill=\"white\" stroke=\"black\" cx=\"334.49\" cy=\"-450\" rx=\"56.59\" ry=\"18\"/>\n",
+       "<text text-anchor=\"middle\" x=\"334.49\" y=\"-446.3\" font-family=\"Times,serif\" font-size=\"14.00\">num_s1_phd</text>\n",
        "</a>\n",
        "</g>\n",
        "</g>\n",
        "<!-- s1_area&#45;&gt;num_s1_phd -->\n",
        "<g id=\"edge2\" class=\"edge\">\n",
        "<title>s1_area-&gt;num_s1_phd</title>\n",
-       "<path fill=\"none\" stroke=\"black\" d=\"M330.24,-720.46C323.88,-710.32 316.22,-696.85 311.34,-684 303.74,-663.97 298.86,-640.18 295.95,-622.24\"/>\n",
-       "<polygon fill=\"black\" stroke=\"black\" points=\"299.39,-621.53 294.43,-612.17 292.47,-622.58 299.39,-621.53\"/>\n",
+       "<path fill=\"none\" stroke=\"black\" d=\"M409.87,-575.85C408.53,-557.09 404.36,-526.67 391.49,-504 384.86,-492.31 374.79,-481.71 364.94,-473.11\"/>\n",
+       "<polygon fill=\"black\" stroke=\"black\" points=\"367.09,-470.35 357.16,-466.66 362.63,-475.74 367.09,-470.35\"/>\n",
        "</g>\n",
        "<!-- num_s1_pe -->\n",
-       "<g id=\"node22\" class=\"node\">\n",
+       "<g id=\"node16\" class=\"node\">\n",
        "<title>num_s1_pe</title>\n",
-       "<g id=\"a_node22\"><a xlink:href=\"#num-s1-pe\" xlink:title=\"num_s1_pe\">\n",
-       "<ellipse fill=\"white\" stroke=\"black\" cx=\"382.34\" cy=\"-666\" rx=\"61.99\" ry=\"18\"/>\n",
-       "<text text-anchor=\"middle\" x=\"382.34\" y=\"-662.3\" font-family=\"Times,serif\" font-size=\"14.00\">num_s1_pe</text>\n",
+       "<g id=\"a_node16\"><a xlink:href=\"#num-s1-pe\" xlink:title=\"num_s1_pe\">\n",
+       "<ellipse fill=\"white\" stroke=\"black\" cx=\"330.49\" cy=\"-522\" rx=\"51.99\" ry=\"18\"/>\n",
+       "<text text-anchor=\"middle\" x=\"330.49\" y=\"-518.3\" font-family=\"Times,serif\" font-size=\"14.00\">num_s1_pe</text>\n",
        "</a>\n",
        "</g>\n",
        "</g>\n",
        "<!-- s1_area&#45;&gt;num_s1_pe -->\n",
-       "<g id=\"edge40\" class=\"edge\">\n",
+       "<g id=\"edge22\" class=\"edge\">\n",
        "<title>s1_area-&gt;num_s1_pe</title>\n",
-       "<path fill=\"none\" stroke=\"black\" d=\"M351.27,-720.05C356.1,-711.8 362.02,-701.7 367.39,-692.54\"/>\n",
-       "<polygon fill=\"black\" stroke=\"black\" points=\"370.48,-694.19 372.51,-683.79 364.44,-690.65 370.48,-694.19\"/>\n",
+       "<path fill=\"none\" stroke=\"black\" d=\"M393.13,-577.81C382.35,-568.38 368.3,-556.08 356.24,-545.53\"/>\n",
+       "<polygon fill=\"black\" stroke=\"black\" points=\"358.48,-542.84 348.65,-538.89 353.87,-548.11 358.48,-542.84\"/>\n",
        "</g>\n",
        "<!-- num_photon -->\n",
        "<g id=\"node4\" class=\"node\">\n",
        "<title>num_photon</title>\n",
        "<g id=\"a_node4\"><a xlink:href=\"#num-photon\" xlink:title=\"num_photon\">\n",
-       "<ellipse fill=\"white\" stroke=\"black\" cx=\"224.34\" cy=\"-306\" rx=\"67.69\" ry=\"18\"/>\n",
-       "<text text-anchor=\"middle\" x=\"224.34\" y=\"-302.3\" font-family=\"Times,serif\" font-size=\"14.00\">num_photon</text>\n",
+       "<ellipse fill=\"white\" stroke=\"black\" cx=\"388.49\" cy=\"-306\" rx=\"55.79\" ry=\"18\"/>\n",
+       "<text text-anchor=\"middle\" x=\"388.49\" y=\"-302.3\" font-family=\"Times,serif\" font-size=\"14.00\">num_photon</text>\n",
        "</a>\n",
        "</g>\n",
        "</g>\n",
        "<!-- num_s1_phd&#45;&gt;num_photon -->\n",
        "<g id=\"edge3\" class=\"edge\">\n",
        "<title>num_s1_phd-&gt;num_photon</title>\n",
-       "<path fill=\"none\" stroke=\"black\" d=\"M288.29,-575.97C276.94,-528.19 244.7,-392.62 230.83,-334.27\"/>\n",
-       "<polygon fill=\"black\" stroke=\"black\" points=\"234.18,-333.23 228.46,-324.31 227.37,-334.84 234.18,-333.23\"/>\n",
+       "<path fill=\"none\" stroke=\"black\" d=\"M351.51,-432.41C360.44,-422.66 370.7,-409.61 376.49,-396 384.82,-376.42 387.68,-352.43 388.53,-334.29\"/>\n",
+       "<polygon fill=\"black\" stroke=\"black\" points=\"392.04,-334.2 388.84,-324.1 385.04,-334 392.04,-334.2\"/>\n",
        "</g>\n",
-       "<!-- num_s1_phd&#45;&gt;s1_correction -->\n",
-       "<g id=\"edge38\" class=\"edge\">\n",
-       "<title>num_s1_phd-&gt;s1_correction</title>\n",
-       "<path fill=\"none\" stroke=\"black\" d=\"M329.2,-578.67C357.05,-567.84 395.46,-552.9 425.49,-541.22\"/>\n",
-       "<polygon fill=\"black\" stroke=\"black\" points=\"426.86,-544.44 434.91,-537.56 424.33,-537.92 426.86,-544.44\"/>\n",
+       "<!-- s1_lce -->\n",
+       "<g id=\"node12\" class=\"node\">\n",
+       "<title>s1_lce</title>\n",
+       "<g id=\"a_node12\"><a xlink:href=\"#s1-lce\" xlink:title=\"s1_lce\">\n",
+       "<ellipse fill=\"white\" stroke=\"black\" cx=\"334.49\" cy=\"-378\" rx=\"33.29\" ry=\"18\"/>\n",
+       "<text text-anchor=\"middle\" x=\"334.49\" y=\"-374.3\" font-family=\"Times,serif\" font-size=\"14.00\">s1_lce</text>\n",
+       "</a>\n",
+       "</g>\n",
+       "</g>\n",
+       "<!-- num_s1_phd&#45;&gt;s1_lce -->\n",
+       "<g id=\"edge20\" class=\"edge\">\n",
+       "<title>num_s1_phd-&gt;s1_lce</title>\n",
+       "<path fill=\"none\" stroke=\"black\" d=\"M334.49,-431.7C334.49,-423.98 334.49,-414.71 334.49,-406.11\"/>\n",
+       "<polygon fill=\"black\" stroke=\"black\" points=\"337.99,-406.1 334.49,-396.1 330.99,-406.1 337.99,-406.1\"/>\n",
        "</g>\n",
        "<!-- num_quanta -->\n",
        "<g id=\"node5\" class=\"node\">\n",
        "<title>num_quanta</title>\n",
        "<g id=\"a_node5\"><a xlink:href=\"#num-quanta\" xlink:title=\"num_quanta\">\n",
-       "<ellipse fill=\"white\" stroke=\"black\" cx=\"383.34\" cy=\"-162\" rx=\"67.69\" ry=\"18\"/>\n",
-       "<text text-anchor=\"middle\" x=\"383.34\" y=\"-158.3\" font-family=\"Times,serif\" font-size=\"14.00\">num_quanta</text>\n",
+       "<ellipse fill=\"white\" stroke=\"black\" cx=\"366.49\" cy=\"-162\" rx=\"54.69\" ry=\"18\"/>\n",
+       "<text text-anchor=\"middle\" x=\"366.49\" y=\"-158.3\" font-family=\"Times,serif\" font-size=\"14.00\">num_quanta</text>\n",
        "</a>\n",
        "</g>\n",
        "</g>\n",
        "<!-- num_photon&#45;&gt;num_quanta -->\n",
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        "<title>num_photon-&gt;num_quanta</title>\n",
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        "<!-- cS2&#45;&gt;S2Correction -->\n",
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        "<!-- S2PE -->\n",
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        "<title>S2PE</title>\n",
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        "</g>\n",
        "</g>\n",
        "<!-- S2&#45;&gt;S2PE -->\n",
-       "<g id=\"edge24\" class=\"edge\">\n",
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+       "<polygon fill=\"black\" stroke=\"black\" points=\"587.57,-406.2 584.36,-396.1 580.57,-406 587.57,-406.2\"/>\n",
+       "</g>\n",
+       "<!-- S2PE&#45;&gt;PositionSpectra -->\n",
+       "<g id=\"edge29\" class=\"edge\">\n",
+       "<title>S2PE-&gt;PositionSpectra</title>\n",
+       "<path fill=\"none\" stroke=\"black\" d=\"M579.95,-359.92C570.67,-329.28 548.46,-263.69 515.84,-216 508.49,-205.24 498.72,-194.86 489.52,-186.18\"/>\n",
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        "</g>\n",
        "<!-- S2PE&#45;&gt;ElectronDrifted -->\n",
-       "<g id=\"edge25\" class=\"edge\">\n",
+       "<g id=\"edge26\" class=\"edge\">\n",
        "<title>S2PE-&gt;ElectronDrifted</title>\n",
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+       "<polygon fill=\"black\" stroke=\"black\" points=\"474.8,-322.8 464.25,-321.83 471.89,-329.17 474.8,-322.8\"/>\n",
+       "</g>\n",
+       "<!-- S2LCE -->\n",
+       "<g id=\"node21\" class=\"node\">\n",
+       "<title>S2LCE</title>\n",
+       "<g id=\"a_node21\"><a xlink:href=\"#S2LCE\" xlink:title=\"S2LCE\">\n",
+       "<ellipse fill=\"white\" stroke=\"black\" cx=\"627.84\" cy=\"-306\" rx=\"36.29\" ry=\"18\"/>\n",
+       "<text text-anchor=\"middle\" x=\"627.84\" y=\"-302.3\" font-family=\"Times,serif\" font-size=\"14.00\">S2LCE</text>\n",
+       "</a>\n",
        "</g>\n",
-       "<!-- S2PE&#45;&gt;S2Correction -->\n",
+       "</g>\n",
+       "<!-- S2PE&#45;&gt;S2LCE -->\n",
+       "<g id=\"edge28\" class=\"edge\">\n",
+       "<title>S2PE-&gt;S2LCE</title>\n",
+       "<path fill=\"none\" stroke=\"black\" d=\"M594.82,-360.76C600.01,-352.32 606.47,-341.8 612.3,-332.31\"/>\n",
+       "<polygon fill=\"black\" stroke=\"black\" points=\"615.38,-333.99 617.63,-323.63 609.41,-330.32 615.38,-333.99\"/>\n",
+       "</g>\n",
+       "<!-- S2LCE&#45;&gt;PositionSpectra -->\n",
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        "</g>\n",
        "<!-- Eff -->\n",
-       "<g id=\"node21\" class=\"node\">\n",
+       "<g id=\"node23\" class=\"node\">\n",
        "<title>Eff</title>\n",
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        "</g>\n",
        "<!-- S2Threshold -->\n",
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+       "<g id=\"node24\" class=\"node\">\n",
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        "<!-- Eff&#45;&gt;S2Threshold -->\n",
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        "</g>\n",
        "<!-- Eff&#45;&gt;S1ReconEff -->\n",
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        "<!-- S1CutAccept -->\n",
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+       "<g id=\"node26\" class=\"node\">\n",
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        "<!-- ElectronDrifted -->\n",
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        "<!-- PositionRecon&#45;&gt;ElectronDrifted -->\n",
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        "<!-- ChargeYield -->\n",
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        "<!-- S2&#45;&gt;S2PE -->\n",
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+       "<!-- S2PE&#45;&gt;PositionSpectra -->\n",
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+       "<title>S2LCE</title>\n",
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+       "</g>\n",
+       "<!-- S2PE&#45;&gt;S2LCE -->\n",
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@@ -2296,7 +2503,7 @@
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