From 44dbbee5b70a52e83bade5432a97968e929e5cb8 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 1 Nov 2021 22:01:07 +0000 Subject: [PATCH 01/17] Bump scikit-learn from 1.0 to 1.0.1 Bumps [scikit-learn](https://github.com/scikit-learn/scikit-learn) from 1.0 to 1.0.1. - [Release notes](https://github.com/scikit-learn/scikit-learn/releases) - [Commits](https://github.com/scikit-learn/scikit-learn/compare/1.0...1.0.1) --- updated-dependencies: - dependency-name: scikit-learn dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index ebca63dc..b82ed292 100644 --- a/requirements.txt +++ b/requirements.txt @@ -45,7 +45,7 @@ pymongo==3.12.0 pytest==6.2.5 pytest-runner==5.3.1 torch==1.9.1 # Strax dependency -scikit-learn==1.0 +scikit-learn==1.0.1 scipy==1.7.1 seaborn==0.11.2 strax==1.1.1 From 68309e63398d4b48c8217f58b5614e8084734415 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 1 Nov 2021 22:01:12 +0000 Subject: [PATCH 02/17] Bump torch from 1.9.1 to 1.10.0 Bumps [torch](https://github.com/pytorch/pytorch) from 1.9.1 to 1.10.0. - [Release notes](https://github.com/pytorch/pytorch/releases) - [Changelog](https://github.com/pytorch/pytorch/blob/master/RELEASE.md) - [Commits](https://github.com/pytorch/pytorch/compare/v1.9.1...v1.10.0) --- updated-dependencies: - dependency-name: torch dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index ebca63dc..99c0b7f3 100644 --- a/requirements.txt +++ b/requirements.txt @@ -44,7 +44,7 @@ pyarrow==5.0.0 # Necessary for pandas feather i/o pymongo==3.12.0 pytest==6.2.5 pytest-runner==5.3.1 -torch==1.9.1 # Strax dependency +torch==1.10.0 # Strax dependency scikit-learn==1.0 scipy==1.7.1 seaborn==0.11.2 From 74cc1a8f8d77388368443673a97a73f8386826cb Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 1 Nov 2021 22:01:20 +0000 Subject: [PATCH 03/17] Bump hypothesis from 6.23.1 to 6.24.1 Bumps [hypothesis](https://github.com/HypothesisWorks/hypothesis) from 6.23.1 to 6.24.1. - [Release notes](https://github.com/HypothesisWorks/hypothesis/releases) - [Commits](https://github.com/HypothesisWorks/hypothesis/compare/hypothesis-python-6.23.1...hypothesis-python-6.24.1) --- updated-dependencies: - dependency-name: hypothesis dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index ebca63dc..23441fa7 100644 --- a/requirements.txt +++ b/requirements.txt @@ -16,7 +16,7 @@ flamedisx==1.5.0 future==0.18.2 GitPython==3.1.24 # Pegasus dependency holoviews==1.14.6 -hypothesis==6.23.1 +hypothesis==6.24.1 iminuit==2.8.3 ipympl==0.8.0 # For online monitoring jedi==0.17.2 # upgrading to 0.18.0 breaks autocomplete in ipython From e8ae6c541a8c09f9d1b3b5f86ae72e188497dd9e Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 1 Nov 2021 22:01:23 +0000 Subject: [PATCH 04/17] Bump ipympl from 0.8.0 to 0.8.2 Bumps [ipympl](http://matplotlib.org) from 0.8.0 to 0.8.2. --- updated-dependencies: - dependency-name: ipympl dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index ebca63dc..0fe72e55 100644 --- a/requirements.txt +++ b/requirements.txt @@ -18,7 +18,7 @@ GitPython==3.1.24 # Pegasus dependency holoviews==1.14.6 hypothesis==6.23.1 iminuit==2.8.3 -ipympl==0.8.0 # For online monitoring +ipympl==0.8.2 # For online monitoring jedi==0.17.2 # upgrading to 0.18.0 breaks autocomplete in ipython jupyter==1.0.0 jupyter-resource-usage==0.6.0 # Memory viewer for notebooks From 9590baf51c617e90f34a3a33860f02f5a4fa4e4a Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 1 Nov 2021 22:01:26 +0000 Subject: [PATCH 05/17] Bump snakeviz from 2.1.0 to 2.1.1 Bumps [snakeviz](https://github.com/jiffyclub/snakeviz) from 2.1.0 to 2.1.1. - [Release notes](https://github.com/jiffyclub/snakeviz/releases) - [Changelog](https://github.com/jiffyclub/snakeviz/blob/master/CHANGES.rst) - [Commits](https://github.com/jiffyclub/snakeviz/compare/v2.1.0...v2.1.1) --- updated-dependencies: - dependency-name: snakeviz dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index ebca63dc..ec23d101 100644 --- a/requirements.txt +++ b/requirements.txt @@ -50,7 +50,7 @@ scipy==1.7.1 seaborn==0.11.2 strax==1.1.1 straxen==1.1.2 -snakeviz==2.1.0 +snakeviz==2.1.1 sphinx==4.2.0 tables==3.6.1 # pytables, necessary for pandas hdf5 i/o tensorflow==2.6.0 # TF2.4.1 should not bring in additional AVX2 requirements (https://github.com/XENONnT/base_environment/issues/433) From 4f38084b2664e3844230e740314521eb46563c18 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 1 Nov 2021 22:01:30 +0000 Subject: [PATCH 06/17] Bump iminuit from 2.8.3 to 2.8.4 Bumps [iminuit](https://github.com/scikit-hep/iminuit) from 2.8.3 to 2.8.4. - [Release notes](https://github.com/scikit-hep/iminuit/releases) - [Changelog](https://github.com/scikit-hep/iminuit/blob/develop/doc/changelog.rst) - [Commits](https://github.com/scikit-hep/iminuit/commits/v2.8.4) --- updated-dependencies: - dependency-name: iminuit dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index ebca63dc..8263b0f8 100644 --- a/requirements.txt +++ b/requirements.txt @@ -17,7 +17,7 @@ future==0.18.2 GitPython==3.1.24 # Pegasus dependency holoviews==1.14.6 hypothesis==6.23.1 -iminuit==2.8.3 +iminuit==2.8.4 ipympl==0.8.0 # For online monitoring jedi==0.17.2 # upgrading to 0.18.0 breaks autocomplete in ipython jupyter==1.0.0 From 59d61f68b1b1073a12192d42f595bd9f57a54467 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 1 Nov 2021 22:01:34 +0000 Subject: [PATCH 07/17] Bump flake8 from 3.9.2 to 4.0.1 Bumps [flake8](https://github.com/pycqa/flake8) from 3.9.2 to 4.0.1. - [Release notes](https://github.com/pycqa/flake8/releases) - [Commits](https://github.com/pycqa/flake8/compare/3.9.2...4.0.1) --- updated-dependencies: - dependency-name: flake8 dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index ebca63dc..63cfb886 100644 --- a/requirements.txt +++ b/requirements.txt @@ -11,7 +11,7 @@ dask-jobqueue==0.7.3 datashader==0.13.0 dill==0.3.4 # Strax dependency distributed===2021.10.0 # Dask extension -flake8==3.9.2 +flake8==4.0.1 flamedisx==1.5.0 future==0.18.2 GitPython==3.1.24 # Pegasus dependency From 5a913577ba4b1c44d89a9610f9b0084c6f636398 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 1 Nov 2021 22:01:41 +0000 Subject: [PATCH 08/17] Bump pyarrow from 5.0.0 to 6.0.0 Bumps [pyarrow](https://github.com/pandas-dev/pandas) from 5.0.0 to 6.0.0. - [Release notes](https://github.com/pandas-dev/pandas/releases) - [Changelog](https://github.com/pandas-dev/pandas/blob/master/RELEASE.md) - [Commits](https://github.com/pandas-dev/pandas/commits) --- updated-dependencies: - dependency-name: pyarrow dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index ebca63dc..0799911b 100644 --- a/requirements.txt +++ b/requirements.txt @@ -40,7 +40,7 @@ parso==0.7.1 # upgrading to 0.8.0 breaks autocomplete in ipython pdmongo==0.1.0 # Strax dependency pika==1.2.0 # Pegasus psutil==5.8.0 # Strax dependency -pyarrow==5.0.0 # Necessary for pandas feather i/o +pyarrow==6.0.0 # Necessary for pandas feather i/o pymongo==3.12.0 pytest==6.2.5 pytest-runner==5.3.1 From a70b1d7fd15ecc51fa4fffb7b357bbb2722b4e61 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 1 Nov 2021 22:01:46 +0000 Subject: [PATCH 09/17] Bump tensorflow from 2.6.0 to 2.6.1 Bumps [tensorflow](https://github.com/tensorflow/tensorflow) from 2.6.0 to 2.6.1. - [Release notes](https://github.com/tensorflow/tensorflow/releases) - [Changelog](https://github.com/tensorflow/tensorflow/blob/v2.6.1/RELEASE.md) - [Commits](https://github.com/tensorflow/tensorflow/compare/v2.6.0...v2.6.1) --- updated-dependencies: - dependency-name: tensorflow dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index ebca63dc..e331ba6e 100644 --- a/requirements.txt +++ b/requirements.txt @@ -53,7 +53,7 @@ straxen==1.1.2 snakeviz==2.1.0 sphinx==4.2.0 tables==3.6.1 # pytables, necessary for pandas hdf5 i/o -tensorflow==2.6.0 # TF2.4.1 should not bring in additional AVX2 requirements (https://github.com/XENONnT/base_environment/issues/433) +tensorflow==2.6.1 # TF2.4.1 should not bring in additional AVX2 requirements (https://github.com/XENONnT/base_environment/issues/433) tensorflow_probability==0.14.1 typing_extensions==3.7.4.3 # Tensorflow and bokeh dependency tqdm==4.62.3 From eba871d4b2d9b2ec88ad0600a370a8eef908774d Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 1 Nov 2021 22:01:59 +0000 Subject: [PATCH 10/17] Bump pymongo from 3.12.0 to 3.12.1 Bumps [pymongo](https://github.com/mongodb/mongo-python-driver) from 3.12.0 to 3.12.1. - [Release notes](https://github.com/mongodb/mongo-python-driver/releases) - [Changelog](https://github.com/mongodb/mongo-python-driver/blob/3.12.1/doc/changelog.rst) - [Commits](https://github.com/mongodb/mongo-python-driver/compare/3.12.0...3.12.1) --- updated-dependencies: - dependency-name: pymongo dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index ebca63dc..aa88f28e 100644 --- a/requirements.txt +++ b/requirements.txt @@ -41,7 +41,7 @@ pdmongo==0.1.0 # Strax dependency pika==1.2.0 # Pegasus psutil==5.8.0 # Strax dependency pyarrow==5.0.0 # Necessary for pandas feather i/o -pymongo==3.12.0 +pymongo==3.12.1 pytest==6.2.5 pytest-runner==5.3.1 torch==1.9.1 # Strax dependency From c2e9a6be30872013d4154dae5daa35b3ce8e2be2 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 1 Nov 2021 22:02:02 +0000 Subject: [PATCH 11/17] Bump blosc from 1.10.4 to 1.10.6 Bumps [blosc](https://github.com/blosc/python-blosc) from 1.10.4 to 1.10.6. - [Release notes](https://github.com/blosc/python-blosc/releases) - [Changelog](https://github.com/Blosc/python-blosc/blob/master/RELEASE_NOTES.rst) - [Commits](https://github.com/blosc/python-blosc/compare/v1.10.4...v1.10.6) --- updated-dependencies: - dependency-name: blosc dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index ebca63dc..9bd2d185 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,5 +1,5 @@ astropy==4.3.1 -blosc==1.10.4 # Strax dependency +blosc==1.10.6 # Strax dependency bokeh==2.3.3 boltons==21.0.0 codenamize==1.2.3 # for human-readable hashing From 0118cdbc4c42ea7a1b74b530abd94239f6a9dfbd Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 1 Nov 2021 22:02:46 +0000 Subject: [PATCH 12/17] Bump jupyterlab from 3.1.14 to 3.2.1 Bumps [jupyterlab](https://github.com/jupyterlab/jupyterlab) from 3.1.14 to 3.2.1. - [Release notes](https://github.com/jupyterlab/jupyterlab/releases) - [Changelog](https://github.com/jupyterlab/jupyterlab/blob/master/CHANGELOG.md) - [Commits](https://github.com/jupyterlab/jupyterlab/compare/@jupyterlab/vdom@3.1.14...@jupyterlab/vdom@3.2.1) --- updated-dependencies: - dependency-name: jupyterlab dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index ebca63dc..979ba406 100644 --- a/requirements.txt +++ b/requirements.txt @@ -22,7 +22,7 @@ ipympl==0.8.0 # For online monitoring jedi==0.17.2 # upgrading to 0.18.0 breaks autocomplete in ipython jupyter==1.0.0 jupyter-resource-usage==0.6.0 # Memory viewer for notebooks -jupyterlab==3.1.14 +jupyterlab==3.2.1 line_profiler==3.3.1 llvmlite==0.37.0 # numba depencency lz4==3.1.3 # Strax dependency From 290ddb3b87cbd3d229b6d27bda3ce3f90196fdd2 Mon Sep 17 00:00:00 2001 From: Joran Angevaare Date: Fri, 19 Nov 2021 08:46:01 +0100 Subject: [PATCH 13/17] Bump straxen --- requirements.txt | 12 +++++++++--- 1 file changed, 9 insertions(+), 3 deletions(-) diff --git a/requirements.txt b/requirements.txt index 23047097..d70f5961 100644 --- a/requirements.txt +++ b/requirements.txt @@ -11,6 +11,7 @@ dask-jobqueue==0.7.3 datashader==0.13.0 dill==0.3.4 # Strax dependency distributed===2021.10.0 # Dask extension +commentjson==0.9.0 flake8==3.9.2 flamedisx==1.5.0 future==0.18.2 @@ -36,7 +37,10 @@ nestpy==1.4.8 # WFsim dependency npshmex==0.2.1 # Strax dependency numba==0.54.1 # Strax dependency numpy==1.19.5 +packaging==20.8 +pandas==1.3.2 pandoc==1.1.0 +panel==0.12.1 parso==0.7.1 # upgrading to 0.8.0 breaks autocomplete in ipython pdmongo==0.1.0 # Strax dependency pika==1.2.0 # Pegasus @@ -46,11 +50,12 @@ pymongo==3.12.0 pytest==6.2.5 pytest-runner==5.3.1 torch==1.9.1 # Strax dependency -scikit-learn==1.0 +typing_extensions==3.7.4.3 # Tensorflow/bokeh depencency +scikit-learn==1.0.1 scipy==1.7.1 seaborn==0.11.2 -strax==1.1.1 -straxen==1.1.2 +strax==1.1.2 +straxen==1.1.3 snakeviz==2.1.0 sphinx==4.2.0 tables==3.6.1 # pytables, necessary for pandas hdf5 i/o @@ -61,4 +66,5 @@ tqdm==4.62.3 utilix==0.6.5 # dependency for straxen, admix wfsim==0.5.9 git+git://github.com/ershockley/admix@v1.0.6 +xarray==0.19.0 zstd==1.4.9.1 # Strax dependency From 943121e9b7131d7cd7182e17d5cd647f7dd0ca08 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Diego=20Ram=C3=ADrez=20Garc=C3=ADa?= Date: Fri, 19 Nov 2021 18:28:13 +0100 Subject: [PATCH 14/17] Update requirements.txt --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index 23047097..60cb43d9 100644 --- a/requirements.txt +++ b/requirements.txt @@ -59,6 +59,6 @@ tensorflow_probability==0.14.1 typing_extensions==3.7.4.3 # Tensorflow and bokeh dependency tqdm==4.62.3 utilix==0.6.5 # dependency for straxen, admix -wfsim==0.5.9 +wfsim==0.5.10 git+git://github.com/ershockley/admix@v1.0.6 zstd==1.4.9.1 # Strax dependency From e035ea121965ccbb742e7679f8280458b259aab2 Mon Sep 17 00:00:00 2001 From: Evan Shockley Date: Fri, 19 Nov 2021 12:56:38 -0800 Subject: [PATCH 15/17] Update requirements.txt --- requirements.txt | 1 - 1 file changed, 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index 6db25636..6857bd92 100644 --- a/requirements.txt +++ b/requirements.txt @@ -50,7 +50,6 @@ pymongo==3.12.0 pytest==6.2.5 pytest-runner==5.3.1 torch==1.9.1 # Strax dependency -typing_extensions==3.7.4.3 # Tensorflow/bokeh depencency scikit-learn==1.0.1 scipy==1.7.1 seaborn==0.11.2 From 80bf0f8945f6657d49f2792594586d92d6647a64 Mon Sep 17 00:00:00 2001 From: Evan Shockley Date: Fri, 19 Nov 2021 13:50:16 -0800 Subject: [PATCH 16/17] Order requirements --- requirements.txt | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/requirements.txt b/requirements.txt index 9ab81aa7..5e8e2331 100644 --- a/requirements.txt +++ b/requirements.txt @@ -48,8 +48,6 @@ pyarrow==6.0.0 # Necessary for pandas feather i/o pymongo==3.12.1 pytest==6.2.5 pytest-runner==5.3.1 -torch==1.10.0 # Strax dependency -typing_extensions==3.7.4.3 # Tensorflow/bokeh depencency scikit-learn==1.0.1 scipy==1.7.1 seaborn==0.11.2 @@ -60,6 +58,7 @@ sphinx==4.2.0 tables==3.6.1 # pytables, necessary for pandas hdf5 i/o tensorflow==2.6.1 # TF2.4.1 should not bring in additional AVX2 requirements (https://github.com/XENONnT/base_environment/issues/433) tensorflow_probability==0.14.1 +torch==1.10.0 # Strax dependency typing_extensions==3.7.4.3 # Tensorflow and bokeh dependency tqdm==4.62.3 utilix==0.6.5 # dependency for straxen, admix From 701a94470f81746803badf94ef9a5c34361f60c1 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Sun, 21 Nov 2021 19:25:32 +0100 Subject: [PATCH 17/17] Bump tensorflow from 2.6.0 to 2.6.1 (#768) Bumps [tensorflow](https://github.com/tensorflow/tensorflow) from 2.6.0 to 2.6.1. - [Release notes](https://github.com/tensorflow/tensorflow/releases) - [Changelog](https://github.com/tensorflow/tensorflow/blob/v2.6.1/RELEASE.md) - [Commits](https://github.com/tensorflow/tensorflow/compare/v2.6.0...v2.6.1) --- updated-dependencies: - dependency-name: tensorflow dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Evan Shockley Co-authored-by: Joran Angevaare --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index 6857bd92..821591f5 100644 --- a/requirements.txt +++ b/requirements.txt @@ -58,7 +58,7 @@ straxen==1.1.3 snakeviz==2.1.0 sphinx==4.2.0 tables==3.6.1 # pytables, necessary for pandas hdf5 i/o -tensorflow==2.6.0 # TF2.4.1 should not bring in additional AVX2 requirements (https://github.com/XENONnT/base_environment/issues/433) +tensorflow==2.6.1 # TF2.4.1 should not bring in additional AVX2 requirements (https://github.com/XENONnT/base_environment/issues/433) tensorflow_probability==0.14.1 typing_extensions==3.7.4.3 # Tensorflow and bokeh dependency tqdm==4.62.3