pytest.yml

# Test straxen on each PR.
# We run three types of tests:
#  - Pytest -> these are the "normal" tests and should be run for all
#    python versions
#  - Coveralls -> this is to see if we are covering all our lines of
#    code with our tests. The results get uploaded to
#    coveralls.io/github/XENONnT/straxen
#  - pytest_no_database -> we want to make sure we can run the tests even
#    if we don't have access to our database since this will e.g. happen
#    when someone is pushing a PR from their own fork as we don't
#    propagate our secrets there.

name: Test package

# Trigger this code when a new release is published
on:
  workflow_dispatch:
  release:
    types: [ created ]
  pull_request:
  push:
    branches:
      - master
      - stable
      - development

jobs:
  test:
    name: "${{ matrix.test }}_py${{ matrix.python-version }}"
    runs-on: ubuntu-latest
    env:
      HAVE_ACCESS_TO_SECRETS: ${{ secrets.RUNDB_API_URL }}
    strategy:
      fail-fast: False
      matrix:
        python-version: [ "3.9", "3.10" ]
        test: [ 'coveralls', 'pytest', 'pytest_no_database' ]
        # Drop some not crucial tests for python 3.10 and 3.11
        exclude:
          - python-version: "3.11"
            test: coveralls
          - python-version: "3.10"
            test: pytest_no_database
          - python-version: "3.11"
            test: pytest_no_database

    steps:
      # Setup and installation
      - name: Checkout repo
        uses: actions/checkout@v4

      - name: Setup python
        uses: actions/setup-python@v5.2.0
        with:
          python-version: ${{ matrix.python-version }}

      - name: Install dependencies
        run: sudo apt-get install -y graphviz

      - name: Install requirements
        run: |
          pip install pytest hypothesis coverage coveralls
          pip install git+https://github.com/XENONnT/base_environment.git --force-reinstall
          pip install git+https://github.com/AxFoundation/strax.git --force-reinstall

      - name: Start MongoDB
        uses: supercharge/mongodb-github-action@1.11.0
        with:
          mongodb-version: 4.4.1

      - name: patch utilix file
        # Secrets and required files
        # Patch this file if we want to have access to the database
        if: matrix.test != 'pytest_no_database'
        run: bash .github/scripts/create_readonly_utilix_config.sh
        env:
          # RunDB
          RUNDB_API_URL: ${{ secrets.RUNDB_API_URL }}
          RUNDB_API_USER_READONLY: ${{ secrets.RUNDB_API_USER_READONLY }}
          RUNDB_API_PASSWORD_READONLY: ${{ secrets.RUNDB_API_PASSWORD_READONLY}}
          PYMONGO_URL: ${{ secrets.PYMONGO_URL }}
          PYMONGO_USER: ${{ secrets.PYMONGO_USER }}
          PYMONGO_PASSWORD: ${{ secrets.PYMONGO_PASSWORD }}
          PYMONGO_DATABASE: ${{ secrets.PYMONGO_DATABASE }}
          # SCADA
          SCADA_URL: ${{ secrets.SCADA_URL }}
          SCADA_VALUE_URL: ${{ secrets.SCADA_VALUE_URL }}
          SCADA_USER: ${{ secrets.SCADA_USER }}
          SCADA_LOGIN_URL: ${{ secrets.SCADA_LOGIN_URL }}
          SCADA_PWD: ${{ secrets.SCADA_PWD }}

      - name: Create pre-apply function file
        # In case we do not have database. We need to make a local file for
        # The pre_apply_function (see #559).
        if: env.HAVE_ACCESS_TO_SECRETS == null || matrix.test == 'pytest_no_database'
        run: bash .github/scripts/create_pre_apply_function.sh $HOME

      - name: Test package
        # This is running a normal test
        if: (matrix.test == 'pytest_no_database' || matrix.test == 'pytest')
        env:
          TEST_MONGO_URI: 'mongodb://localhost:27017/'
        run: |
          coverage run --source=straxen -m pytest --durations 0
          coverage report
      - name: Coveralls
        # Make the coverage report and upload
        env:
          TEST_MONGO_URI: 'mongodb://localhost:27017/'
          NUMBA_DISABLE_JIT: 1
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
        if: matrix.test == 'coveralls' && (github.actor != 'dependabot[bot]') && env.HAVE_ACCESS_TO_SECRETS != null
        run: |
          # Install straxen first
          pip install -e .

          # Omit ./straxen/storage/rucio_remote.py since it's only tested in base_env
          coverage run --source=straxen -m pytest -v

          # Test notebooks
          coverage run --append --source=straxen -m pytest -v --nbmake -n=auto notebooks/tutorials/SuperrunsExample.ipynb
          coverage run --append --source=straxen -m pytest -v --nbmake -n=auto notebooks/tutorials/ScadaInterfaceExample.ipynb

          # Run twice, once without and once with db access
          if test -f ~/.xenon_config; then
            rm ~/.xenon_config
          fi
          bash .github/scripts/create_pre_apply_function.sh $HOME
          coverage run --append --source=straxen -m pytest -v
          coveralls --service=github
      - name: goodbye
        run: echo "tests done, bye bye"