diff --git a/ARIC/deconvolution.py b/ARIC/deconvolution.py index b80ee30..91ed982 100644 --- a/ARIC/deconvolution.py +++ b/ARIC/deconvolution.py @@ -52,6 +52,8 @@ def ARIC( if selected_marker: tmppath = os.path.splitext(mix_path)[0] os.makedirs(tmppath, exist_ok=True) + else: + tmppath = None raw_markers = list(ref.index) cell_type = ref.columns.values diff --git a/README.rst b/README.rst index 796526f..2dd7f0b 100644 --- a/README.rst +++ b/README.rst @@ -5,3 +5,6 @@ Accurate and robust inference of cell type proportions from bulk gene expression version 0.0.1, 2021.06.18 The first test version. +version 0.1.0, 2021.07.16 +Add function to output all the markers. + diff --git a/setup.py b/setup.py index 1f08d55..ea4bcc0 100644 --- a/setup.py +++ b/setup.py @@ -17,7 +17,7 @@ def read(fname): setup( name="ARIC", - version="0.0.1", + version="0.1.0", keywords=("pip", "ARIC"), description="ARIC: Accurate and robust inference of cell type proportions from bulk gene expression or DNA methylation data", license="GPL V3",