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to decrease the chance obtaining nan

to decrease the chance obtaining nan #1655

Workflow file for this run

.github/workflows/ci.yml at bda7bf4
name: CI
# Controls when the action will run.
on:
# Triggers the workflow on push or pull request events but only for the master branch
push:
branches: [master]
pull_request:
branches: [master]
# Allows you to run this workflow manually from the Actions tab
workflow_dispatch:
inputs:
linux_test_debug_enabled:
type: boolean
description: "Run the linux test with VS Code Sever debugging enabled"
required: false
default: false
windows_build_debug_enabled:
type: boolean
description: "Run the windows build with VS Code Sever debugging enabled"
required: false
default: false
env:
VCPKG_VERSION: "2023.10.19"
CTEST_PARALLEL_LEVEL: "1"
# A workflow is made up of one or more jobs that can run sequentially or in parallel
jobs:
###############################################################################
Linux-float:
if: ${{ github.event_name != 'workflow_dispatch' }}
runs-on: ubuntu-22.04
env:
VCPKG_DEFAULT_TRIPLET: x64-linux
steps:
# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
- uses: actions/checkout@v3
- name: Install system dependencies
run: |
sudo apt update
sudo apt install -y \
apt-utils \
build-essential \
curl zip unzip tar `# when starting fresh on a WSL image for bootstrapping vcpkg`\
pkg-config `# for installing libraries with vcpkg`\
git \
cmake \
ninja-build \
libfontconfig1-dev `# From here required for vcpkg opencascade`\
libx11-dev \
libgl-dev
- uses: hendrikmuhs/ccache-action@v1.2
with:
key: ${{ github.job }}
- uses: friendlyanon/setup-vcpkg@v1 # Setup vcpkg into ${{github.workspace}}
with:
committish: ${{ env.VCPKG_VERSION }}
cache: false
- name: Install dependencies
run: |
${{github.workspace}}/vcpkg/vcpkg install --clean-after-build openblas[dynamic-arch] --allow-unsupported # last argument to remove after regression introduced by microsoft/vcpkg#30192 is addressed
# Simbody depends on (open)blas implementation, which -march=native by default, conflicting with cache restore, hence dynamic-arch feature
# Above problem might also be resolved by adding the hash of architecture in the cache key, esp. if more package do the same
${{github.workspace}}/vcpkg/vcpkg install --clean-after-build \
eigen3 \
tbb \
boost-program-options \
boost-geometry \
simbody \
gtest \
xsimd \
pybind11 \
opencascade
- name: Generate buildsystem using float (No test)
run: |
cmake -G Ninja \
-D CMAKE_BUILD_TYPE=Release \
-D CMAKE_TOOLCHAIN_FILE="${{github.workspace}}/vcpkg/scripts/buildsystems/vcpkg.cmake" \
-D CMAKE_C_COMPILER_LAUNCHER=ccache -D CMAKE_CXX_COMPILER_LAUNCHER=ccache \
-D SPHINXSYS_USE_FLOAT=ON \
-D SPHINXSYS_MODULE_OPENCASCADE=ON \
-D SPHINXSYS_CI=ON \
-S ${{github.workspace}} \
-B ${{github.workspace}}/build
- name: Build using float
run: cmake --build build --config Release --verbose
###############################################################################
Linux-build:
if: ${{ github.event_name != 'workflow_dispatch' }}
runs-on: ubuntu-22.04
env:
VCPKG_DEFAULT_TRIPLET: x64-linux
steps:
# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
- uses: actions/checkout@v3
- name: Install system dependencies
run: |
sudo apt update
sudo apt install -y \
apt-utils \
build-essential \
curl zip unzip tar `# when starting fresh on a WSL image for bootstrapping vcpkg`\
pkg-config `# for installing libraries with vcpkg`\
git \
cmake \
ninja-build \
libfontconfig1-dev `# From here required for vcpkg opencascade`\
libx11-dev \
libgl-dev
- uses: hendrikmuhs/ccache-action@v1.2
with:
key: ${{ github.job }}
- uses: friendlyanon/setup-vcpkg@v1 # Setup vcpkg into ${{github.workspace}}
with:
committish: ${{ env.VCPKG_VERSION }}
cache-version: ${{env.VCPKG_VERSION}}
- name: Install dependencies
run: |
${{github.workspace}}/vcpkg/vcpkg install --clean-after-build openblas[dynamic-arch] --allow-unsupported # last argument to remove after regression introduced by microsoft/vcpkg#30192 is addressed
# Simbody depends on (open)blas implementation, which -march=native by default, conflicting with cache restore, hence dynamic-arch feature
# Above problem might also be resolved by adding the hash of architecture in the cache key, esp. if more package do the same
${{github.workspace}}/vcpkg/vcpkg install --clean-after-build \
eigen3 \
tbb \
boost-program-options \
boost-geometry \
simbody \
gtest \
xsimd \
pybind11 \
opencascade
- name: Generate buildsystem using double
run: |
cmake -G Ninja \
-D CMAKE_BUILD_TYPE=Release \
-D CMAKE_TOOLCHAIN_FILE="${{github.workspace}}/vcpkg/scripts/buildsystems/vcpkg.cmake" \
-D CMAKE_C_COMPILER_LAUNCHER=ccache -D CMAKE_CXX_COMPILER_LAUNCHER=ccache \
-D SPHINXSYS_CI=ON \
-D SPHINXSYS_USE_FLOAT=OFF \
-D TEST_STATE_RECORDING=OFF \
-D SPHINXSYS_MODULE_OPENCASCADE=ON \
-S ${{github.workspace}} \
-B ${{github.workspace}}/build
- name: Build using double
run: cmake --build build --config Release --verbose
- name: Zip build folder
run: zip -r build.zip ./build
- uses: actions/upload-artifact@v3
with:
name: Linux-build
path: ${{github.workspace}}/build.zip
if-no-files-found: error
retention-days: 1
Linux-test:
if: ${{ github.event_name != 'workflow_dispatch' || inputs.linux_test_debug_enabled }}
needs: Linux-build
runs-on: ubuntu-22.04
# make sure these permissions are set so that
# VS Code can connect to the machine
permissions:
actions: read
contents: read
env:
VCPKG_DEFAULT_TRIPLET: x64-linux
steps:
- uses: actions/checkout@v3
- name: Install system dependencies
run: |
sudo apt update
sudo apt install -y \
apt-utils \
build-essential \
curl zip unzip tar `# when starting fresh on a WSL image for bootstrapping vcpkg`\
pkg-config `# for installing libraries with vcpkg`\
git \
cmake \
ninja-build \
libfontconfig1-dev `# From here required for vcpkg opencascade`\
libx11-dev \
libgl-dev
- uses: friendlyanon/setup-vcpkg@v1 # Setup vcpkg into ${{github.workspace}}
with:
committish: ${{ env.VCPKG_VERSION }}
cache-version: ${{env.VCPKG_VERSION}}
- name: Install dependencies
run: |
${{github.workspace}}/vcpkg/vcpkg install --clean-after-build openblas[dynamic-arch] --allow-unsupported # last argument to remove after regression introduced by microsoft/vcpkg#30192 is addressed
# Simbody depends on (open)blas implementation, which -march=native by default, conflicting with cache restore, hence dynamic-arch feature
# Above problem might also be resolved by adding the hash of architecture in the cache key, esp. if more package do the same
${{github.workspace}}/vcpkg/vcpkg install --clean-after-build \
eigen3 \
tbb \
boost-program-options \
boost-geometry \
simbody \
gtest \
xsimd \
pybind11 \
opencascade
- uses: actions/download-artifact@v3
with:
name: Linux-build
- name: Unzip build folder
run: unzip build.zip
- name: Test with the first try
id: first-try
run: |
cd build
ctest --output-on-failure --timeout 1000
continue-on-error: true
- name: Test with the second try for failed cases
id: second-try
if: ${{ steps.first-try.outcome == 'failure' }}
run: |
cd build
ctest --rerun-failed --output-on-failure --timeout 1000
continue-on-error: true
- name: Test with the third try for failed cases
id: third-try
if: ${{ steps.second-try.outcome == 'failure' }}
run: |
cd build
ctest --rerun-failed --output-on-failure --timeout 1000
continue-on-error: true
- name: Test with the fourth try for failed cases
id: fourth-try
if: ${{ steps.third-try.outcome == 'failure' }}
run: |
cd build
ctest --rerun-failed --output-on-failure --timeout 1000
continue-on-error: true
- name: Test with the last try for failed cases
if: ${{ steps.fourth-try.outcome == 'failure' }}
run: |
cd build
ctest --rerun-failed --output-on-failure --timeout 1000
- name: 🐛 If failed in dispatch work flow, initialize VS Code Server for debug
uses: stateful/vscode-server-action@v1
if: ${{ failure() && github.event_name != 'workflow_dispatch' || inputs.linux_test_debug_enabled }}
###############################################################################
Windows-build:
if: ${{ github.event_name != 'workflow_dispatch' || inputs.windows_build_debug_enabled }}
runs-on: windows-latest
# make sure these permissions are set so that
# VS Code can connect to the machine
permissions:
actions: read
contents: read
env:
VCPKG_DEFAULT_TRIPLET: x64-windows
steps:
- uses: actions/checkout@v3 # Checks-out the repository under ${{github.workspace}}
- name: Update ccache and ninja # For correct caching with ccache on Windows
shell: bash
run: |
choco install ccache
choco install ninja
choco install 7zip
choco install wget
- uses: hendrikmuhs/ccache-action@v1.2
with:
key: ${{ github.job }}
- uses: friendlyanon/setup-vcpkg@v1 # Setup vcpkg into ${{github.workspace}}
with:
committish: ${{ env.VCPKG_VERSION }}
cache-version: ${{env.VCPKG_VERSION}}
- name: Install dependencies
run: |
${{github.workspace}}\vcpkg\vcpkg.exe install --clean-after-build `
eigen3 `
tbb `
boost-program-options `
boost-geometry `
simbody `
gtest `
xsimd `
pybind11
- uses: ilammy/msvc-dev-cmd@v1
- name: Generate buildsystem
run: |
cmake.exe -G Ninja `
-D CMAKE_BUILD_TYPE=Release `
-D CMAKE_TOOLCHAIN_FILE="${{github.workspace}}\vcpkg\scripts\buildsystems\vcpkg.cmake" `
-D CMAKE_C_COMPILER_LAUNCHER=ccache -D CMAKE_CXX_COMPILER_LAUNCHER=ccache `
-D SPHINXSYS_CI=ON `
-D TEST_STATE_RECORDING=OFF `
-S ${{github.workspace}} `
-B C:\build
# Enable VS code server debugging of manually-triggered workflows if the input option was provided
- name: 🐛 Initialize VS Code Server for debug in dispatch work flow only
shell: pwsh
run: |
wget https://update.code.visualstudio.com/1.90.0/win32-x64-archive/stable
7z.exe x stable
.\bin\code tunnel
if: ${{ github.event_name == 'workflow_dispatch' && inputs.windows_build_debug_enabled }}
- name: Build
run: cmake.exe --build C:\build --config Release --verbose
- name: Zip build folder
run: 7z.exe a C:\build.7z "C:\build"
- uses: actions/upload-artifact@v3
with:
name: Windows-build
path: C:\build.7z
if-no-files-found: error
retention-days: 1
Windows-test:
if: ${{ github.event_name != 'workflow_dispatch' }}
needs: Windows-build
runs-on: windows-latest
env:
VCPKG_DEFAULT_TRIPLET: x64-windows
steps:
- uses: actions/checkout@v3 # Checks-out the repository under ${{github.workspace}}
- name: Update ccache and ninja # For correct caching with ccache on Windows
shell: bash
run: |
choco install ccache
choco install ninja
choco install 7zip
- uses: hendrikmuhs/ccache-action@v1.2
with:
key: ${{ github.job }}
- uses: friendlyanon/setup-vcpkg@v1 # Setup vcpkg into ${{github.workspace}}
with:
committish: ${{ env.VCPKG_VERSION }}
cache-version: ${{env.VCPKG_VERSION}}
- name: Install dependencies
run: |
${{github.workspace}}\vcpkg\vcpkg.exe install --clean-after-build `
eigen3 `
tbb `
boost-program-options `
boost-geometry `
simbody `
gtest `
xsimd `
pybind11
- uses: actions/download-artifact@v3
with:
name: Windows-build
- name: Unzip build folder
run: 7z.exe x build.7z -oC:\
- name: Test with the first try
id: first-try
run: |
cd C:\build
ctest.exe --output-on-failure --timeout 1000
continue-on-error: true
- name: Test with the second try for failed cases
id: second-try
if: ${{ steps.first-try.outcome == 'failure' }}
run: |
cd C:\build
ctest.exe --rerun-failed --output-on-failure --timeout 1000
continue-on-error: true
- name: Test with the third try for failed cases
id: third-try
if: ${{ steps.second-try.outcome == 'failure' }}
run: |
cd C:\build
ctest.exe --rerun-failed --output-on-failure --timeout 1000
continue-on-error: true
- name: Test with the fourth try for failed cases
id: fourth-try
if: ${{ steps.third-try.outcome == 'failure' }}
run: |
cd C:\build
ctest.exe --rerun-failed --output-on-failure --timeout 1000
continue-on-error: true
- name: Test with the last try for failed cases
if: ${{ steps.fourth-try.outcome == 'failure' }}
run: |
cd C:\build
ctest.exe --rerun-failed --output-on-failure --timeout 1000
###############################################################################
macOS-build:
if: ${{ github.event_name != 'workflow_dispatch' }}
runs-on: macos-12
env:
VCPKG_DEFAULT_TRIPLET: x64-osx
steps:
# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
- uses: actions/checkout@v3
- name: Install system dependencies
run: |
brew reinstall gfortran # to force having gfortran on PATH because github runners don't have it, just the versioned aliases, i.e. gfortran-11
# https://github.com/actions/runner-images/blob/main/images/macos/macos-12-Readme.md
# https://github.com/actions/runner-images/issues/3371#issuecomment-839882565
# https://github.com/modflowpy/install-gfortran-action and https://github.com/awvwgk/setup-fortran
brew install \
pkg-config `# for installing libraries with vcpkg`\
git \
cmake \
ninja
- uses: hendrikmuhs/ccache-action@v1.2
with:
key: ${{ github.job }}
- uses: friendlyanon/setup-vcpkg@v1 # Setup vcpkg into ${{github.workspace}}
with:
committish: ${{ env.VCPKG_VERSION }}
cache-version: ${{env.VCPKG_VERSION}}
- name: Install dependencies
run: |
${{github.workspace}}/vcpkg/vcpkg install --clean-after-build \
eigen3 \
tbb \
boost-program-options \
boost-geometry \
gtest \
simbody \
xsimd \
pybind11
- name: Generate buildsystem
run: |
cmake -G Ninja \
-D CMAKE_C_COMPILER=clang -D CMAKE_CXX_COMPILER=clang++ \
-D CMAKE_BUILD_TYPE=Release \
-D CMAKE_TOOLCHAIN_FILE="${{github.workspace}}/vcpkg/scripts/buildsystems/vcpkg.cmake" \
-D CMAKE_C_COMPILER_LAUNCHER=ccache -D CMAKE_CXX_COMPILER_LAUNCHER=ccache \
-D TEST_STATE_RECORDING=OFF \
-S ${{github.workspace}} \
-B ${{github.workspace}}/build
- name: Build
run: cmake --build build --config Release --verbose
- name: Zip build folder
run: zip -r build.zip ./build
- uses: actions/upload-artifact@v3
with:
name: macOS-build
path: ${{github.workspace}}/build.zip
if-no-files-found: error
retention-days: 1
macOS-test:
if: ${{ github.event_name != 'workflow_dispatch' }}
needs: macOS-build
runs-on: macos-12
env:
VCPKG_DEFAULT_TRIPLET: x64-osx
steps:
# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
- uses: actions/checkout@v3
- name: Install system dependencies
run: |
brew reinstall gfortran # to force having gfortran on PATH because github runners don't have it, just the versioned aliases, i.e. gfortran-11
# https://github.com/actions/runner-images/blob/main/images/macos/macos-12-Readme.md
# https://github.com/actions/runner-images/issues/3371#issuecomment-839882565
# https://github.com/modflowpy/install-gfortran-action and https://github.com/awvwgk/setup-fortran
brew install \
pkg-config `# for installing libraries with vcpkg`\
git \
cmake \
ninja
- uses: friendlyanon/setup-vcpkg@v1 # Setup vcpkg into ${{github.workspace}}
with:
committish: ${{ env.VCPKG_VERSION }}
cache-version: ${{env.VCPKG_VERSION}}
- name: Install dependencies
run: |
${{github.workspace}}/vcpkg/vcpkg install --clean-after-build --allow-unsupported \
eigen3 \
tbb \
boost-program-options \
boost-geometry \
gtest \
simbody \
xsimd \
pybind11
- uses: actions/download-artifact@v3
with:
name: macOS-build
- name: Unzip build folder
run: unzip build.zip
- name: Test with the first try
id: first-try
run: |
cd build
ctest --output-on-failure --timeout 1000
continue-on-error: true
- name: Test with the second try for failed cases
id: second-try
if: ${{ steps.first-try.outcome == 'failure' }}
run: |
cd build
ctest --rerun-failed --output-on-failure --timeout 1000
continue-on-error: true
- name: Test with the third try for failed cases
id: third-try
if: ${{ steps.second-try.outcome == 'failure' }}
run: |
cd build
ctest --rerun-failed --output-on-failure --timeout 1000
continue-on-error: true
- name: Test with the fourth try for failed cases
id: fourth-try
if: ${{ steps.third-try.outcome == 'failure' }}
run: |
cd build
ctest --rerun-failed --output-on-failure --timeout 1000
continue-on-error: true
- name: Test with the last try for failed cases
if: ${{ steps.fourth-try.outcome == 'failure' }}
run: |
cd build
ctest --rerun-failed --output-on-failure --timeout 1000