Fix speed of sound calculation for elastic solids #1754

Workflow file for this run

	name: CI

	# Controls when the action will run.
	on:
	# Triggers the workflow on push or pull request events but only for the master branch
	push:
	branches: [master]
	pull_request:
	branches: [master]
	# Allows you to run this workflow manually from the Actions tab
	workflow_dispatch:
	inputs:
	linux_test_debug_enabled:
	type: boolean
	description: "Run the linux test with VS Code Sever debugging enabled"
	required: false
	default: false
	windows_build_debug_enabled:
	type: boolean
	description: "Run the windows build with VS Code Sever debugging enabled"
	required: false
	default: false
	env:
	VCPKG_VERSION: "2023.10.19"
	CTEST_PARALLEL_LEVEL: "1"

	# A workflow is made up of one or more jobs that can run sequentially or in parallel
	jobs:
	###############################################################################
	Linux-sycl:
	if: ${{ github.event_name != 'workflow_dispatch' }}
	runs-on: ubuntu-22.04
	env:
	VCPKG_DEFAULT_TRIPLET: x64-linux

	steps:
	# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
	- uses: actions/checkout@v3

	- name: Install system dependencies
	run: \|
	sudo apt update
	sudo apt install -y \
	apt-utils \
	build-essential \
	curl zip unzip tar `# when starting fresh on a WSL image for bootstrapping vcpkg`\
	pkg-config `# for installing libraries with vcpkg`\
	git \
	cmake \
	ninja-build \
	libfontconfig1-dev `# From here required for vcpkg opencascade`\
	libx11-dev \
	libgl-dev
	wget -O- https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB \| gpg --dearmor \| sudo tee /usr/share/keyrings/oneapi-archive-keyring.gpg > /dev/null
	echo "deb [signed-by=/usr/share/keyrings/oneapi-archive-keyring.gpg] https://apt.repos.intel.com/oneapi all main" \| sudo tee /etc/apt/sources.list.d/oneAPI.list
	sudo apt update
	sudo apt install intel-basekit \
	intel-oneapi-runtime-opencl

	- uses: hendrikmuhs/ccache-action@v1.2
	with:
	key: ${{ github.job }}

	- uses: friendlyanon/setup-vcpkg@v1 # Setup vcpkg into ${{github.workspace}}
	with:
	committish: ${{ env.VCPKG_VERSION }}
	cache-version: ${{env.VCPKG_VERSION}}

	- name: Install dependencies
	run: \|
	${{github.workspace}}/vcpkg/vcpkg install --clean-after-build openblas[dynamic-arch] --allow-unsupported # last argument to remove after regression introduced by microsoft/vcpkg#30192 is addressed
	# Simbody depends on (open)blas implementation, which -march=native by default, conflicting with cache restore, hence dynamic-arch feature
	# Above problem might also be resolved by adding the hash of architecture in the cache key, esp. if more package do the same
	${{github.workspace}}/vcpkg/vcpkg install --clean-after-build \
	eigen3 \
	tbb \
	boost-program-options \
	boost-geometry \
	simbody \
	gtest \
	pybind11

	- name: Generate buildsystem
	run: \|
	# sycl environment has to be setup for each session
	source /opt/intel/oneapi/setvars.sh --include-intel-llvm
	cmake -G Ninja \
	-D CMAKE_BUILD_TYPE=Release \
	-D CMAKE_C_COMPILER=icx -D CMAKE_CXX_COMPILER=icpx \
	-D CMAKE_TOOLCHAIN_FILE="${{github.workspace}}/vcpkg/scripts/buildsystems/vcpkg.cmake" \
	-D CMAKE_C_COMPILER_LAUNCHER=ccache -D CMAKE_CXX_COMPILER_LAUNCHER=ccache \
	-D SPHINXSYS_CI=ON \
	-D SPHINXSYS_USE_SYCL=ON \
	-D TEST_STATE_RECORDING=OFF \
	-S ${{github.workspace}} \
	-B ${{github.workspace}}/build

	- name: Build libraries and tests which are using SYCL
	run: \|
	# sycl environment has to be setup for each session
	source /opt/intel/oneapi/setvars.sh --include-intel-llvm
	cmake --build build --config Release --verbose

	- name: Test with the first try
	id: first-try
	run: \|
	source /opt/intel/oneapi/setvars.sh --include-intel-llvm
	cd build/tests/tests_sycl
	ctest --output-on-failure --timeout 1000
	continue-on-error: true

	- name: Test with the second try for failed cases
	id: second-try
	if: ${{ steps.first-try.outcome == 'failure' }}
	run: \|
	source /opt/intel/oneapi/setvars.sh --include-intel-llvm
	cd build/tests/tests_sycl
	ctest --rerun-failed --output-on-failure --timeout 1000
	continue-on-error: true

	- name: Test with the third try for failed cases
	id: third-try
	if: ${{ steps.second-try.outcome == 'failure' }}
	run: \|
	source /opt/intel/oneapi/setvars.sh --include-intel-llvm
	cd build/tests/tests_sycl
	ctest --rerun-failed --output-on-failure --timeout 1000
	continue-on-error: true

	- name: Test with the fourth try for failed cases
	id: fourth-try
	if: ${{ steps.third-try.outcome == 'failure' }}
	run: \|
	source /opt/intel/oneapi/setvars.sh --include-intel-llvm
	cd build/tests/tests_sycl
	ctest --rerun-failed --output-on-failure --timeout 1000
	continue-on-error: true

	- name: Test with the last try for failed cases
	if: ${{ steps.fourth-try.outcome == 'failure' }}
	run: \|
	source /opt/intel/oneapi/setvars.sh --include-intel-llvm
	cd build/tests/tests_sycl
	ctest --rerun-failed --output-on-failure --timeout 1000

	###############################################################################
	Linux-build:
	if: ${{ github.event_name != 'workflow_dispatch' }}
	runs-on: ubuntu-22.04
	env:
	VCPKG_DEFAULT_TRIPLET: x64-linux

	steps:
	# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
	- uses: actions/checkout@v3

	- name: Install system dependencies
	run: \|
	sudo apt update
	sudo apt install -y \
	apt-utils \
	build-essential \
	curl zip unzip tar `# when starting fresh on a WSL image for bootstrapping vcpkg`\
	pkg-config `# for installing libraries with vcpkg`\
	git \
	cmake \
	ninja-build \
	libfontconfig1-dev `# From here required for vcpkg opencascade`\
	libx11-dev \
	libgl-dev

	- uses: hendrikmuhs/ccache-action@v1.2
	with:
	key: ${{ github.job }}

	- uses: friendlyanon/setup-vcpkg@v1 # Setup vcpkg into ${{github.workspace}}
	with:
	committish: ${{ env.VCPKG_VERSION }}
	cache-version: ${{env.VCPKG_VERSION}}

	- name: Install dependencies
	run: \|
	${{github.workspace}}/vcpkg/vcpkg install --clean-after-build openblas[dynamic-arch] --allow-unsupported # last argument to remove after regression introduced by microsoft/vcpkg#30192 is addressed
	# Simbody depends on (open)blas implementation, which -march=native by default, conflicting with cache restore, hence dynamic-arch feature
	# Above problem might also be resolved by adding the hash of architecture in the cache key, esp. if more package do the same
	${{github.workspace}}/vcpkg/vcpkg install --clean-after-build \
	eigen3 \
	tbb \
	boost-program-options \
	boost-geometry \
	simbody \
	gtest \
	xsimd \
	pybind11 \
	opencascade

	- name: Generate buildsystem using double
	run: \|
	cmake -G Ninja \
	-D CMAKE_BUILD_TYPE=Release \
	-D CMAKE_TOOLCHAIN_FILE="${{github.workspace}}/vcpkg/scripts/buildsystems/vcpkg.cmake" \
	-D CMAKE_C_COMPILER_LAUNCHER=ccache -D CMAKE_CXX_COMPILER_LAUNCHER=ccache \
	-D SPHINXSYS_CI=ON \
	-D SPHINXSYS_USE_FLOAT=OFF \
	-D TEST_STATE_RECORDING=OFF \
	-D SPHINXSYS_MODULE_OPENCASCADE=ON \
	-S ${{github.workspace}} \
	-B ${{github.workspace}}/build

	- name: Build using double
	run: cmake --build build --config Release --verbose

	- name: Zip build folder
	run: zip -r build.zip ./build

	- uses: actions/upload-artifact@v3
	with:
	name: Linux-build
	path: ${{github.workspace}}/build.zip
	if-no-files-found: error
	retention-days: 1

	Linux-test:
	if: ${{ github.event_name != 'workflow_dispatch' \|\| inputs.linux_test_debug_enabled }}
	needs: Linux-build
	runs-on: ubuntu-22.04
	# make sure these permissions are set so that
	# VS Code can connect to the machine
	permissions:
	actions: read
	contents: read
	env:
	VCPKG_DEFAULT_TRIPLET: x64-linux

	steps:
	- uses: actions/checkout@v3

	- name: Install system dependencies
	run: \|
	sudo apt update
	sudo apt install -y \
	apt-utils \
	build-essential \
	curl zip unzip tar `# when starting fresh on a WSL image for bootstrapping vcpkg`\
	pkg-config `# for installing libraries with vcpkg`\
	git \
	cmake \
	ninja-build \
	libfontconfig1-dev `# From here required for vcpkg opencascade`\
	libx11-dev \
	libgl-dev

	- uses: friendlyanon/setup-vcpkg@v1 # Setup vcpkg into ${{github.workspace}}
	with:
	committish: ${{ env.VCPKG_VERSION }}
	cache-version: ${{env.VCPKG_VERSION}}

	- name: Install dependencies
	run: \|
	${{github.workspace}}/vcpkg/vcpkg install --clean-after-build openblas[dynamic-arch] --allow-unsupported # last argument to remove after regression introduced by microsoft/vcpkg#30192 is addressed
	# Simbody depends on (open)blas implementation, which -march=native by default, conflicting with cache restore, hence dynamic-arch feature
	# Above problem might also be resolved by adding the hash of architecture in the cache key, esp. if more package do the same
	${{github.workspace}}/vcpkg/vcpkg install --clean-after-build \
	eigen3 \
	tbb \
	boost-program-options \
	boost-geometry \
	simbody \
	gtest \
	xsimd \
	pybind11 \
	opencascade

	- uses: actions/download-artifact@v3
	with:
	name: Linux-build

	- name: Unzip build folder
	run: unzip build.zip

	- name: Test with the first try
	id: first-try
	run: \|
	cd build
	ctest --output-on-failure --timeout 1000
	continue-on-error: true

	- name: Test with the second try for failed cases
	id: second-try
	if: ${{ steps.first-try.outcome == 'failure' }}
	run: \|
	cd build
	ctest --rerun-failed --output-on-failure --timeout 1000
	continue-on-error: true

	- name: Test with the third try for failed cases
	id: third-try
	if: ${{ steps.second-try.outcome == 'failure' }}
	run: \|
	cd build
	ctest --rerun-failed --output-on-failure --timeout 1000
	continue-on-error: true

	- name: Test with the fourth try for failed cases
	id: fourth-try
	if: ${{ steps.third-try.outcome == 'failure' }}
	run: \|
	cd build
	ctest --rerun-failed --output-on-failure --timeout 1000
	continue-on-error: true

	- name: Test with the last try for failed cases
	if: ${{ steps.fourth-try.outcome == 'failure' }}
	run: \|
	cd build
	ctest --rerun-failed --output-on-failure --timeout 1000

	- name: 🐛 If failed in dispatch work flow, initialize VS Code Server for debug
	uses: stateful/vscode-server-action@v1
	if: ${{ failure() && github.event_name != 'workflow_dispatch' \|\| inputs.linux_test_debug_enabled }}

	###############################################################################

	Windows-build:
	if: ${{ github.event_name != 'workflow_dispatch' \|\| inputs.windows_build_debug_enabled }}
	runs-on: windows-latest
	# make sure these permissions are set so that
	# VS Code can connect to the machine
	permissions:
	actions: read
	contents: read
	env:
	VCPKG_DEFAULT_TRIPLET: x64-windows

	steps:
	- uses: actions/checkout@v3 # Checks-out the repository under ${{github.workspace}}

	- name: Update ccache and ninja # For correct caching with ccache on Windows
	shell: bash
	run: \|
	choco install ccache
	choco install ninja
	choco install 7zip
	choco install wget

	- uses: hendrikmuhs/ccache-action@v1.2
	with:
	key: ${{ github.job }}

	- uses: friendlyanon/setup-vcpkg@v1 # Setup vcpkg into ${{github.workspace}}
	with:
	committish: ${{ env.VCPKG_VERSION }}
	cache-version: ${{env.VCPKG_VERSION}}

	- name: Install dependencies
	run: \|
	${{github.workspace}}\vcpkg\vcpkg.exe install --clean-after-build `
	eigen3 `
	tbb `
	boost-program-options `
	boost-geometry `
	simbody `
	gtest `
	xsimd `
	pybind11

	- uses: ilammy/msvc-dev-cmd@v1

	- name: Generate buildsystem
	run: \|
	cmake.exe -G Ninja `
	-D CMAKE_BUILD_TYPE=Release `
	-D CMAKE_TOOLCHAIN_FILE="${{github.workspace}}\vcpkg\scripts\buildsystems\vcpkg.cmake" `
	-D CMAKE_C_COMPILER_LAUNCHER=ccache -D CMAKE_CXX_COMPILER_LAUNCHER=ccache `
	-D SPHINXSYS_CI=ON `
	-D TEST_STATE_RECORDING=OFF `
	-S ${{github.workspace}} `
	-B C:\build

	# Enable VS code server debugging of manually-triggered workflows if the input option was provided
	- name: 🐛 Initialize VS Code Server for debug in dispatch work flow only
	shell: pwsh
	run: \|
	wget https://update.code.visualstudio.com/1.90.0/win32-x64-archive/stable
	7z.exe x stable
	.\bin\code tunnel
	if: ${{ github.event_name == 'workflow_dispatch' && inputs.windows_build_debug_enabled }}

	- name: Build
	run: cmake.exe --build C:\build --config Release --verbose

	- name: Zip build folder
	run: 7z.exe a C:\build.7z "C:\build"

	- uses: actions/upload-artifact@v3
	with:
	name: Windows-build
	path: C:\build.7z
	if-no-files-found: error
	retention-days: 1

	Windows-test:
	if: ${{ github.event_name != 'workflow_dispatch' }}
	needs: Windows-build
	runs-on: windows-latest
	env:
	VCPKG_DEFAULT_TRIPLET: x64-windows

	steps:
	- uses: actions/checkout@v3 # Checks-out the repository under ${{github.workspace}}

	- name: Update ccache and ninja # For correct caching with ccache on Windows
	shell: bash
	run: \|
	choco install ccache
	choco install ninja
	choco install 7zip

	- uses: hendrikmuhs/ccache-action@v1.2
	with:
	key: ${{ github.job }}

	- uses: friendlyanon/setup-vcpkg@v1 # Setup vcpkg into ${{github.workspace}}
	with:
	committish: ${{ env.VCPKG_VERSION }}
	cache-version: ${{env.VCPKG_VERSION}}

	- name: Install dependencies
	run: \|
	${{github.workspace}}\vcpkg\vcpkg.exe install --clean-after-build `
	eigen3 `
	tbb `
	boost-program-options `
	boost-geometry `
	simbody `
	gtest `
	xsimd `
	pybind11

	- uses: actions/download-artifact@v3
	with:
	name: Windows-build

	- name: Unzip build folder
	run: 7z.exe x build.7z -oC:\

	- name: Test with the first try
	id: first-try
	run: \|
	cd C:\build
	ctest.exe --output-on-failure --timeout 1000
	continue-on-error: true

	- name: Test with the second try for failed cases
	id: second-try
	if: ${{ steps.first-try.outcome == 'failure' }}
	run: \|
	cd C:\build
	ctest.exe --rerun-failed --output-on-failure --timeout 1000
	continue-on-error: true

	- name: Test with the third try for failed cases
	id: third-try
	if: ${{ steps.second-try.outcome == 'failure' }}
	run: \|
	cd C:\build
	ctest.exe --rerun-failed --output-on-failure --timeout 1000
	continue-on-error: true

	- name: Test with the fourth try for failed cases
	id: fourth-try
	if: ${{ steps.third-try.outcome == 'failure' }}
	run: \|
	cd C:\build
	ctest.exe --rerun-failed --output-on-failure --timeout 1000
	continue-on-error: true

	- name: Test with the last try for failed cases
	if: ${{ steps.fourth-try.outcome == 'failure' }}
	run: \|
	cd C:\build
	ctest.exe --rerun-failed --output-on-failure --timeout 1000

	###############################################################################

	macOS-build:
	if: ${{ github.event_name != 'workflow_dispatch' }}
	runs-on: macos-12
	env:
	VCPKG_DEFAULT_TRIPLET: x64-osx

	steps:
	# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
	- uses: actions/checkout@v3

	- name: Install system dependencies
	run: \|
	brew reinstall gfortran # to force having gfortran on PATH because github runners don't have it, just the versioned aliases, i.e. gfortran-11
	# https://github.com/actions/runner-images/blob/main/images/macos/macos-12-Readme.md
	# https://github.com/actions/runner-images/issues/3371#issuecomment-839882565
	# https://github.com/modflowpy/install-gfortran-action and https://github.com/awvwgk/setup-fortran
	brew install \
	pkg-config `# for installing libraries with vcpkg`\
	git \
	cmake \
	ninja

	- uses: hendrikmuhs/ccache-action@v1.2
	with:
	key: ${{ github.job }}

	- uses: friendlyanon/setup-vcpkg@v1 # Setup vcpkg into ${{github.workspace}}
	with:
	committish: ${{ env.VCPKG_VERSION }}
	cache-version: ${{env.VCPKG_VERSION}}

	- name: Install dependencies
	run: \|
	${{github.workspace}}/vcpkg/vcpkg install --clean-after-build \
	eigen3 \
	tbb \
	boost-program-options \
	boost-geometry \
	gtest \
	simbody \
	xsimd \
	pybind11

	- name: Generate buildsystem
	run: \|
	cmake -G Ninja \
	-D CMAKE_C_COMPILER=clang -D CMAKE_CXX_COMPILER=clang++ \
	-D CMAKE_BUILD_TYPE=Release \
	-D CMAKE_TOOLCHAIN_FILE="${{github.workspace}}/vcpkg/scripts/buildsystems/vcpkg.cmake" \
	-D CMAKE_C_COMPILER_LAUNCHER=ccache -D CMAKE_CXX_COMPILER_LAUNCHER=ccache \
	-D TEST_STATE_RECORDING=OFF \
	-S ${{github.workspace}} \
	-B ${{github.workspace}}/build

	- name: Build
	run: cmake --build build --config Release --verbose

	- name: Zip build folder
	run: zip -r build.zip ./build

	- uses: actions/upload-artifact@v3
	with:
	name: macOS-build
	path: ${{github.workspace}}/build.zip
	if-no-files-found: error
	retention-days: 1

	macOS-test:
	if: ${{ github.event_name != 'workflow_dispatch' }}
	needs: macOS-build
	runs-on: macos-12
	env:
	VCPKG_DEFAULT_TRIPLET: x64-osx

	steps:
	# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
	- uses: actions/checkout@v3

	- name: Install system dependencies
	run: \|
	brew reinstall gfortran # to force having gfortran on PATH because github runners don't have it, just the versioned aliases, i.e. gfortran-11
	# https://github.com/actions/runner-images/blob/main/images/macos/macos-12-Readme.md
	# https://github.com/actions/runner-images/issues/3371#issuecomment-839882565
	# https://github.com/modflowpy/install-gfortran-action and https://github.com/awvwgk/setup-fortran
	brew install \
	pkg-config `# for installing libraries with vcpkg`\
	git \
	cmake \
	ninja

	- uses: friendlyanon/setup-vcpkg@v1 # Setup vcpkg into ${{github.workspace}}
	with:
	committish: ${{ env.VCPKG_VERSION }}
	cache-version: ${{env.VCPKG_VERSION}}

	- name: Install dependencies
	run: \|
	${{github.workspace}}/vcpkg/vcpkg install --clean-after-build --allow-unsupported \
	eigen3 \
	tbb \
	boost-program-options \
	boost-geometry \
	gtest \
	simbody \
	xsimd \
	pybind11

	- uses: actions/download-artifact@v3
	with:
	name: macOS-build

	- name: Unzip build folder
	run: unzip build.zip

	- name: Test with the first try
	id: first-try
	run: \|
	cd build
	ctest --output-on-failure --timeout 1000
	continue-on-error: true

	- name: Test with the second try for failed cases
	id: second-try
	if: ${{ steps.first-try.outcome == 'failure' }}
	run: \|
	cd build
	ctest --rerun-failed --output-on-failure --timeout 1000
	continue-on-error: true

	- name: Test with the third try for failed cases
	id: third-try
	if: ${{ steps.second-try.outcome == 'failure' }}
	run: \|
	cd build
	ctest --rerun-failed --output-on-failure --timeout 1000
	continue-on-error: true

	- name: Test with the fourth try for failed cases
	id: fourth-try
	if: ${{ steps.third-try.outcome == 'failure' }}
	run: \|
	cd build
	ctest --rerun-failed --output-on-failure --timeout 1000
	continue-on-error: true

	- name: Test with the last try for failed cases
	if: ${{ steps.fourth-try.outcome == 'failure' }}
	run: \|
	cd build
	ctest --rerun-failed --output-on-failure --timeout 1000

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Fix speed of sound calculation for elastic solids #1754

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Fix speed of sound calculation for elastic solids #1754

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Workflow file for this run