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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method(as.data.frame,compareClusterResult)
S3method(barplot,compareClusterResult)
S3method(barplot,enrichResult)
S3method(cnetplot,compareClusterResult)
S3method(cnetplot,enrichResult)
S3method(cnetplot,gseaResult)
S3method(fortify,compareClusterResult)
S3method(fortify,enrichResult)
S3method(fortify,gseaResult)
S3method(ggplot_add,autofacet)
S3method(print,enrichplotDot)
export(autofacet)
export(cnetplot)
export(color_palette)
export(dotplot)
export(dotplot2)
export(emapplot)
export(facet_grid)
export(geom_cnet_label)
export(geom_gsea_gene)
export(ggtable)
export(ggtitle)
export(goplot)
export(gseadist)
export(gseaplot)
export(gseaplot2)
export(gsearank)
export(heatplot)
export(hplot)
export(plot_list)
export(pmcplot)
export(ridgeplot)
export(set_enrichplot_color)
export(ssplot)
export(treeplot)
export(upsetplot)
export(volplot)
exportMethods(dotplot)
exportMethods(emapplot)
exportMethods(goplot)
exportMethods(gseaplot)
exportMethods(heatplot)
exportMethods(pairwise_termsim)
exportMethods(ridgeplot)
exportMethods(ssplot)
exportMethods(treeplot)
exportMethods(upsetplot)
exportMethods(volplot)
import(GOSemSim)
importClassesFrom(DOSE,compareClusterResult)
importFrom(DOSE,geneID)
importFrom(DOSE,geneInCategory)
importFrom(DOSE,theme_dose)
importFrom(RColorBrewer,brewer.pal)
importFrom(aplot,plot_list)
importFrom(ggplot2,"%+%")
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,annotation_custom)
importFrom(ggplot2,coord_cartesian)
importFrom(ggplot2,coord_equal)
importFrom(ggplot2,coord_fixed)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_grid)
importFrom(ggplot2,fortify)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_blank)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_col)
importFrom(ggplot2,geom_density)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_jitter)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_linerange)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_rect)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,geom_violin)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggplotGrob)
importFrom(ggplot2,ggplot_add)
importFrom(ggplot2,ggplot_build)
importFrom(ggplot2,ggplot_gtable)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,guide_colorbar)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,margin)
importFrom(ggplot2,rel)
importFrom(ggplot2,scale_color_continuous)
importFrom(ggplot2,scale_color_gradient)
importFrom(ggplot2,scale_color_gradientn)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_colour_continuous)
importFrom(ggplot2,scale_fill_continuous)
importFrom(ggplot2,scale_fill_discrete)
importFrom(ggplot2,scale_fill_gradient2)
importFrom(ggplot2,scale_fill_gradientn)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_size)
importFrom(ggplot2,scale_size_continuous)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_x_reverse)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,scale_y_discrete)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,theme_void)
importFrom(ggplot2,xlab)
importFrom(ggplot2,xlim)
importFrom(ggplot2,ylab)
importFrom(ggrepel,geom_label_repel)
importFrom(ggrepel,geom_text_repel)
importFrom(ggtangle,cnetplot)
importFrom(ggtangle,geom_cnet_label)
importFrom(ggtangle,geom_edge)
importFrom(ggtree,"%<+%")
importFrom(ggtree,geom_cladelab)
importFrom(ggtree,geom_inset)
importFrom(ggtree,geom_tiplab)
importFrom(ggtree,geom_tippoint)
importFrom(ggtree,ggtree)
importFrom(ggtree,groupClade)
importFrom(ggtree,nodepie)
importFrom(graphics,barplot)
importFrom(grid,arrow)
importFrom(grid,gpar)
importFrom(grid,unit)
importFrom(igraph,'E<-')
importFrom(igraph,'V<-')
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,add_vertices)
importFrom(igraph,delete.edges)
importFrom(igraph,graph.empty)
importFrom(igraph,graph_from_data_frame)
importFrom(magrittr,"%>%")
importFrom(methods,is)
importFrom(methods,setGeneric)
importFrom(methods,setOldClass)
importFrom(plyr,.)
importFrom(plyr,ddply)
importFrom(plyr,mdply)
importFrom(purrr,map_df)
importFrom(rlang,.data)
importFrom(rlang,check_installed)
importFrom(stats,quantile)
importFrom(stats,setNames)
importFrom(utils,data)
importFrom(utils,getFromNamespace)
importFrom(utils,modifyList)
importFrom(yulab.utils,str_wrap)
importFrom(yulab.utils,yulab_msg)