diff --git a/assembler/src/projects/pathracer/README.md b/assembler/src/projects/pathracer/README.md index 0399769714..072f2a70d3 100644 --- a/assembler/src/projects/pathracer/README.md +++ b/assembler/src/projects/pathracer/README.md @@ -60,7 +60,7 @@ Debug output control: _In addition:_ Some other developer options that are not supposed to be tuned by end-user. Could be removed in further releases. ### Output -For each input pHMM (genemode ) PathRacer reports: +For each input pHMM (gene model) PathRacer reports: - **<gene\_name>.seqs.fa**: sequences correspondent to _N_ best scored paths ordered by score along with their alignment in CIGAR format - **<gene\_name>.nucls.fa**: _(for amino acids pHHMs only)_ the same sequences in nucleotides @@ -78,7 +78,7 @@ In addition: ### Examples -One can download example datasets from here +One can download example datasets from - **urban_strain.gfa**: strain assembly graph of Singapore clinical isolation ward wastewater metagenome (SRA accession SRR5997548, dataset H1) - **bla\_all.hmm**: 159 beta-lactamase family pHMMs from **AMRFinder** database