From c09226dcdc0bd7222584f66011c94fdba6f514cb Mon Sep 17 00:00:00 2001 From: Andrey Prjibelski Date: Tue, 14 May 2024 22:22:51 +0300 Subject: [PATCH] start applying Alla edits --- docs/index.md | 13 ++++++++----- 1 file changed, 8 insertions(+), 5 deletions(-) diff --git a/docs/index.md b/docs/index.md index 5d2150164..95436eb87 100644 --- a/docs/index.md +++ b/docs/index.md @@ -2,12 +2,15 @@ ![SPAdes](spades.png){ align=right } -SPAdes - St. Petersburg genome assembler - is a versatile toolkit designed for assembly and analysis of sequencing data. -SPAdes is primarily developed for Illumina sequencing data, but can be used for IonTorrent as well. Most of SPAdes pipelines support hybrid mode, i.e. allow using long reads (PacBio and Oxford Nanopore) as a supplementary data. +SPAdes - St. Petersburg genome assembler - a versatile toolkit designed for assembling and analyzing sequencing data from +Illumina and IonTorrent technologies. In addition, most of SPAdes pipelines support a hybrid mode allowing the use of +long reads (PacBio and Oxford Nanopore) as supplementary data. -SPAdes package contains assembly pipelines for isolated and single-cell bacterial, as well as metagenomic and transcriptomic data. -Additional modes allow to discover bacterial plasmids and RNA viruses, as well as perform HMM-guided assembly. -Besides, SPAdes package includes supplementary tools for efficient k-mer counting and k-mer-based read filtering, assembly graph construction and simplification, sequence-to-graph alignment and metagenomic binning refinement. +SPAdes package provides pipelines for DNA assembly of isolates and single-cell bacteria, as well as of +metagenomic and transcriptomic data. Additional modes allow to recover bacterial plasmids and RNA viruses, +perform HMM-guided assembly and more. SPAdes package also includes supplementary tools for efficient +k-mer counting and k-mer-based read filtering, assembly graph construction and simplification, +sequence-to-graph alignment and metagenomic binning refinement. SPAdes version {{ spades_version() }} was released under GPLv2 on July 14th, 2022 and can be downloaded [here](https://github.com/ablab/spades/releases/latest/).