From c75a075cc8c9631f4f50ffd90d688913307d1caf Mon Sep 17 00:00:00 2001 From: Itolstoganov Date: Fri, 5 Apr 2024 15:01:13 +0200 Subject: [PATCH] Scaffolding fix --- assembler/src/common/modules/path_extend/pipeline/launcher.cpp | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/assembler/src/common/modules/path_extend/pipeline/launcher.cpp b/assembler/src/common/modules/path_extend/pipeline/launcher.cpp index 62022f84e..244e719d1 100644 --- a/assembler/src/common/modules/path_extend/pipeline/launcher.cpp +++ b/assembler/src/common/modules/path_extend/pipeline/launcher.cpp @@ -855,8 +855,9 @@ void PathExtendLauncher::Launch() { size_t curr_path_number = 0; size_t curr_scaffolding_iter = 1; while (prev_path_number != curr_path_number and curr_scaffolding_iter < max_scaffolding_iterations) { - INFO("Starting scaffolding iteration " << curr_scaffolding_iter << " for " << prev_path_number << " paths"); + INFO("Starting scaffolding iteration " << curr_scaffolding_iter << " for " << polished_paths.size() << " paths"); ScaffoldPaths(polished_paths); + polished_paths.FilterEmptyPaths(); curr_path_number = polished_paths.size(); ++curr_scaffolding_iter; }