From fe141b4b472f6867d92395b07591cf4f24122c7a Mon Sep 17 00:00:00 2001
From: Andrey Prjibelski <andrewprzh@gmail.com>
Date: Tue, 12 Jan 2021 16:39:36 +0300
Subject: [PATCH] update maketargz and holyboxcompile

---
 assembler/src/tools/spades_holybox_compile.sh | 8 +++++++-
 make-targz.sh                                 | 2 --
 2 files changed, 7 insertions(+), 3 deletions(-)

diff --git a/assembler/src/tools/spades_holybox_compile.sh b/assembler/src/tools/spades_holybox_compile.sh
index 4f3e68887d..465a616ad6 100644
--- a/assembler/src/tools/spades_holybox_compile.sh
+++ b/assembler/src/tools/spades_holybox_compile.sh
@@ -1,13 +1,19 @@
 #!/bin/bash
 
 # Script for compiling SPAdes using holy build box
-# To compile spades run
+# To compile spades run once:
 # udocker load -i /home/akorobeynikov/spades-buildbox.tar
 # udocker create --name=buildbox cab/spades-buildbox6-64:2.0.0-a4
+# cd /tmp
+# curl -LO https://github.com/Kitware/CMake/releases/download/v3.19.2/cmake-3.19.2-Linux-x86_64.tar.gz
+# tar zxvf cmake-3.19.2-Linux-x86_64.tar.gz
+# udocker run  --user=$(id -u) --volume=/tmp/:/temp buildbox cp -rv /temp/cmake-3.19.2-Linux-x86_64 /hbb/share/cmake-3.19
+# Then run:
 # udocker run  --user=$(id -u) --volume=<path to SPAdes repository>:/spades --cpuset-cpus=16 buildbox bash /spades/assembler/src/tools/spades_holybox_compile.sh
 
 set -e
 source /hbb_exe/activate
+export PATH=/hbb/share/cmake-3.19/bin/:$PATH
 
 set -x
 
diff --git a/make-targz.sh b/make-targz.sh
index 8137c18bbd..4628a26071 100755
--- a/make-targz.sh
+++ b/make-targz.sh
@@ -13,8 +13,6 @@ cp assembler/src/CMakeLists.txt $SRC_DIR/
 
 cp -r assembler/configs $TARGET_DIR/configs
 cp -r assembler/ext $TARGET_DIR/ext
-rm -r $TARGET_DIR/ext/include/cute
-rm -r $TARGET_DIR/ext/include/teamcity_boost
 
 # cleaning .pyc and .pyo
 rm -f $SRC_DIR/*.pyc