No fastg output
#760
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Hello, I am running metaplasmidSPAdes and I get not fastg files. This happened with v. 3.14.1 and is the same with 3.15. I have no problem when running the same command (including paired fastq files with --meta) without --plasmid. Is this normal? Is there any easy way to generate the fastg files once the assembly is finished. Thank you |
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Answered by
asl
Mar 9, 2021
Replies: 1 comment
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Hello Due to way how metaplasmidSPAdes works (see https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6581055/ for more information) there is effectively no assembly graph, hence no FASTG / GFA output. |
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asl
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Hello
Due to way how metaplasmidSPAdes works (see https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6581055/ for more information) there is effectively no assembly graph, hence no FASTG / GFA output.