input data

[fujch7]

Hi，
Is there any differences between these 2 cmd, using --pe1-1 --pe1-2 or -1 -2.
T4.R1.fq.gz and T4.R2.fq.gz were paired-end.

spades.py --meta -t 32 -m 1536 --pe1-1 T4.R1.fq.gz --pe1-2 T4.R2.fq.gz -o spadesAssembly/

spades.py --meta -t 32 -m 1536 -1 T4.R1.fq.gz -2 T4.R2.fq.gz -o spadesAssembly/

[asl]

As indicated in SPAdes manual (https://cab.spbu.ru/files/release3.15.2/manual.html#sec3.1), these are fully equivalent