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CoronaSpades - lacking documentation #925

Answered by asl
DarrenObbard asked this question in Q&A
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Hello

The description of how coronaSPAdes / rnaviralSPAdes uses HMMs is described in paper: https://pubmed.ncbi.nlm.nih.gov/34406356/

From the user perspective we suggest to split HMM set by family (similar to what is done for Coronaviridae HMMs). You can mix HMMs if you can be sure there are no cross-species hits.

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@asl
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asl Feb 24, 2022
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@DarrenObbard
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@asl
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asl Feb 24, 2022
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Converted from issue

This discussion was converted from issue #924 on February 24, 2022 11:47.