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I keep runnning into "finished abnormally, err code: -11" #1267

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Wanjofu opened this issue Mar 28, 2024 · 2 comments
Open
1 task done

I keep runnning into "finished abnormally, err code: -11" #1267

Wanjofu opened this issue Mar 28, 2024 · 2 comments
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outdated Issues with legacy SPAdes versions wsl Issues with unsupported WSL/WSL2

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@Wanjofu
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Wanjofu commented Mar 28, 2024

Description of bug

I am trying to run spades and the same error keeps popping up

spades.log

spades.log

params.txt

params.txt

SPAdes version

3.13.0

Operating System

Linux-5.10.102.1-microsoft-standard-WSL2-x86_64-with-glibc2.35

Python Version

3.9.12

Method of SPAdes installation

conda

No errors reported in spades.log

  • Yes
@asl
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asl commented Mar 29, 2024

I would suggest you to contact conda. We do not maintain these binaries and it seems they are not compatible with WSL.

@asl asl added wsl Issues with unsupported WSL/WSL2 outdated Issues with legacy SPAdes versions labels Mar 29, 2024
@jowodo
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jowodo commented Apr 5, 2024

I encountered the same (or a similar) error:

  • Installation from github release.
  • I observed the error with version 3.15.4-3.15.5 (3.15.3 works).
  • OS: Oracle Linux 9.3
  • python version: 3.9.18, 3.12.2
    MWE:
spades.py --test 

spades.log

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Labels
outdated Issues with legacy SPAdes versions wsl Issues with unsupported WSL/WSL2
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