broken after five-day running

[B1991ing]

Description of bug

Dear spades team,

I tried at least three times on the same sample, but with same error each time, basically stopped at the same step --- Processing /storage/public/home/2023050563/shiyan/soapnuke/14MA_2.TM_paired.fq.gz.

Error screenshot

Log file
spades.log.txt

Looking forward your reply as soon as possible.

Thank you very much.

Best,

Bing

spades.log

spades.log.txt

params.txt

health_pylorus_14_metaSPAdes.sh.txt

SPAdes version

spades-3.15.5_py311

Operating System

HPC

Python Version

python-3.11.4

Method of SPAdes installation

https://github.com/ablab/spades

[asl]

Hello

This is a known issue of 3rd party library we are using. So far the only workaround is to do some quality trimming and skipping read error correction via --only-assembler