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broken after five-day running #1288
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Hello This is a known issue of 3rd party library we are using. So far the only workaround is to do some quality trimming and skipping read error correction via |
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Description of bug
Dear spades team,
I tried at least three times on the same sample, but with same error each time, basically stopped at the same step --- Processing /storage/public/home/2023050563/shiyan/soapnuke/14MA_2.TM_paired.fq.gz.
Error screenshot
![截屏2024-05-06 15 02 03](https://private-user-images.githubusercontent.com/155892166/328101466-32674102-d5ff-4e63-8829-3286aa9dda54.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpc3MiOiJnaXRodWIuY29tIiwiYXVkIjoicmF3LmdpdGh1YnVzZXJjb250ZW50LmNvbSIsImtleSI6ImtleTUiLCJleHAiOjE3MjQyNzM1MDIsIm5iZiI6MTcyNDI3MzIwMiwicGF0aCI6Ii8xNTU4OTIxNjYvMzI4MTAxNDY2LTMyNjc0MTAyLWQ1ZmYtNGU2My04ODI5LTMyODZhYTlkZGE1NC5wbmc_WC1BbXotQWxnb3JpdGhtPUFXUzQtSE1BQy1TSEEyNTYmWC1BbXotQ3JlZGVudGlhbD1BS0lBVkNPRFlMU0E1M1BRSzRaQSUyRjIwMjQwODIxJTJGdXMtZWFzdC0xJTJGczMlMkZhd3M0X3JlcXVlc3QmWC1BbXotRGF0ZT0yMDI0MDgyMVQyMDQ2NDJaJlgtQW16LUV4cGlyZXM9MzAwJlgtQW16LVNpZ25hdHVyZT0yZjEyMGM5MDIxNGY0NjJkNWQxZDU0NzJmYWQ1YjQ5MmRiODcxNjMwMjdiYzIwNmI2N2RiNzQyNTNhZjI3YWNiJlgtQW16LVNpZ25lZEhlYWRlcnM9aG9zdCZhY3Rvcl9pZD0wJmtleV9pZD0wJnJlcG9faWQ9MCJ9.Kp7OlBxvXJxG_c30abkr3IH9GHwcCx3Ke3937FxFrS4)
Log file
spades.log.txt
Looking forward your reply as soon as possible.
Thank you very much.
Best,
Bing
spades.log
spades.log.txt
params.txt
health_pylorus_14_metaSPAdes.sh.txt
SPAdes version
spades-3.15.5_py311
Operating System
HPC
Python Version
python-3.11.4
Method of SPAdes installation
https://github.com/ablab/spades
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