CHANGELOG.md

Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog and this project adheres to Semantic Versioning.

Unreleased

[0.25.0] - 03-27-2024

• 828 and 826 add configurable heartbeats to noVNC connections.

0.24.2 - 01-24-2024

• 823 Corrected a mistake in converting duration to seconds.
• 821 add container_start_args to pass options to the start command.

0.24.1 - 11-29-2023

820 Reverts 818

0.24.0 - 11-28-2023

• Code cleanup and separate arguments with whitespace in Fujitsu TCS adapter by @mnakao in OSC#808
• Add OUT_OF_MEMORY state for Slurm by @robinkar in OSC#809
• find_port: avoid infinite loop by @utkarshayachit in OSC#811
• handle find_port error codes by @utkarshayachit in OSC#812
• vnc: run websockify as background process by @utkarshayachit in OSC#813
• Add working_dir option for Fujitsu TCS job scheduler by @mnakao in OSC#816
• Minor fix for Fujitsu TCS by @mnakao in OSC#817
• Update rake requirement from ~> 13.0.1 to ~> 13.1.0 by @dependabot in OSC#814
• Changes default return value for cluster.batch_connect_ssh_allow? by @HazelGrant in OSC#818

0.23.5 - 04-10-2023

Fixed

• 804 fixed a kubernetes bug in the info_all code path.
• Slurm -M flag now correctly accounts for full path sacctmgr commands in 807.

0.23.4 - 03-06-2023

Fixed

• 800 fixed some Fujitsu bugs.

0.23.3 - 02-17-2023

Added

• ACLs now respond to allowlist and blocklist in 795.
• Sites can now use OOD_SSH_PORT to use a nonstandard port in 797.

0.23.2 - 02-02-2023

Fixed

• The linux host adapter should correctly extract the full apptainer pid in 794.

0.23.1 - 02-01-2023

Fixed

• QueueInfo objects also upcase accounts when applicable in 792.

Added

• queue_name has the alias queue in 790.

0.23.0 - 01-17-2023

Added

• 787 added the queues API to the adapter class with support for Slurm.
• 783 added the accounts API to the adapter class with support for Slurm.

Fixed

• The linux host adapter now supports apptainer in 788.

0.22.0 - 10-31-2022

Added

• Added the vnc_container batch connect template in 774.
• https://osc.github.io/ood_core is now updated on every commit to master in 765.

Fixed

• Kubernetes can now read mulitple secrets in 778.
• PBSPro correctly reads usernames with periods in them in 780.

0.21.0 - 08-01-2022

Added

• Added the fujitsu_tcs adapter in 766.

0.20.2 - 07-28-2022

• Fixed an issue with Slurm's cluster_info in 762.
• Relaxed Ruby requirement down to 2.5 in 771.

0.20.1 - 07-21-2022

• Fixed turbovnc compatability issue with the -nohttpd flag in 767.

0.20.0 - 06-03-2022

• Adapters can now respond to cluster_info in 752. This returns information about the cluster like how many nodes are available and so on. Only Slurm support in this release.
• OodCore::Job::Info now has a gpus attribute in 753. Only Slurm support in this release.
• Support Ruby 3 in 759

0.19.0 - 02-03-2022

Added

• Systemd adapter in 743.

Fixed

• The linux host adapter is a little more portable in 333.
• Improved pod security for the k8s adapter in 748.

0.18.1 - 10-18-2021

Fixed

• Fixed kubernetes initialization in 331.

0.18.0 - 10-18-2021

Fixed

• Fixed LHA crashing on strange bash output in 322.

Added

• All adapters now respond to #{adapter}? methods like slurm?, pbspro?, kubernetes? and so on in 326.

Changed

• The kubernetes adapter now expects to set context statically in 324. And can now accept context as a part of it's interface. It will now also always send --context when using OIDC and that context defaults to the clustername in 327.
• Removed the activesupport dependency in 329.

0.17.6 - 8-24-2021

Added

• kubernetes now allows for arbitrary labels to be set in 317.
• kubernetes now allows for limits and requests to be different in 318.

0.17.5 - 8-20-2021

Fixed

• kubernetes jobs delete without waiting in 314.

0.17.4 - 7-29-2021

Functionally the same as 0.17.3 but with some CI updates.

0.17.3 - 7-29-2021

Fixed

• Fixed handling of pods in a startup phase in 303.

Added

• Enable automatic population of supplemental groups in 305.

0.17.2 - 7-14-2021

Fixed

• Fixed k8s adapter to only show Running pods as running in 300.

0.17.1 - 6-14-2021

Fixed

• Fixed 278 where unschedulable pods will now show up as queued_held status.

Changed

• KUBECONFIG now defaults to /dev/null in the kubernetes adapter in 292.

Added

• Sites can now set batch_connect.ssh_allow on the cluster to disable the buttons to start a shell session to compute nodes in 289.
• POD_PORT is now available to jobs in the kubernetes adapter in 290.
• Kubernetes pods now support a startProbe in 291.

0.17.0 - 5-26-2021

Fixed

• All Kubernetes resources now have the same labels in 280.
• Kubernetes does not crash when no configmap is defined in 282.
• Kubernetes will not specify init containers if there are none in 284.

Added

• Kubernetes, Slurm and Torque now support the script option gpus_per_node in 266.
• Kubernetes will now save the pod.yml into the staged root in 277.
• Kubernetes now allows for node selector in 264.
• Kubernetes pods now have access the environment variable POD_NAMESPACE in 275.
• Kubernetes pods can now specify the image pull policy in 272.
• Cluster config's batch_connect now support ssh_allow to disable sshing to compute nodes per cluster in 286.
• Kubernetes will now add the templated script content to a configmap in 273.

Changed

• Kubernetes username prefix no longer appends a - in 271.

0.16.1 - 2021-04-23

Fixed

• memorized some allow? variables to have better support around ACLS in 267

0.16.0 - 2021-04-20

Fixed

• tmux 2.7+ bug in the linux host adapter in 2.5.8 and 259.

Changed

• Changed how k8s configmaps in are defined in 251. The data structure now expects a key called files which is an array of objects that hold filename, data, mount_path, sub_path and init_mount_path. 255 also relates to this interface change.

Added

• The k8s adapter can now specify environment variables and creates defaults in 252.
• The k8s adapter can now specify image pull secrets in 253.

0.15.1 - 2021-02-25

Fixed

• kubernetes adapter uses the full module for helpers in 245.

Changed

• kubernetes pods spawn with runAsNonRoot set to true in 247.
• kubernetes pods can spawn with supplemental groups along with some other in security defaults in 246.

0.15.0 - 2021-01-26

Fixed

• ccq adapter now accepts job names with spaces in 210
• k8s correctly handles having no mount volumes in 239

Added

• k8s adapter now applies account metadata to resources in 216 and 231
• k8s adapter can now prefix namespaces in 218
• k8s adapter now applies time limits to pods in 224

Changed

• testing automation is now done in github actions in 221
• update bunlder to 2.1.4 and ruby to 2.7 in 235 updated bundler and ruby
• k8s adapter more appropriately labels unschedulable pods as queued in 230
• k8s adapter now uses the script#ood_connection_info API instead of script#native in 222

0.14.0 - 2020-10-01

Added

• Kubernetes adapter in PR 156

Fixed

• Catch Slurm times. 209
• LHA race condition in deleteing tmp files. 212

0.13.0 - 2020-08-10

Added

• CloudyCluster CCQ Adapter

0.12.0 - 2020-08-05

Added

• qos option to Slurm and Torque #205
• native hash returned in qstat for SGE adapter #198
• option for specifying submit_host to submit jobs via ssh on other host #204

Fixed

• SGE handle milliseconds instead of seconds when milliseconds used #206
• Torque's native "hash" for job submission now handles env vars values with spaces #202

0.11.4 - 2020-05-27

Fixed

• Environment exports in SLURM while implementing #158 and #109 in #163

0.11.3 - 2020-05-11

Fixed

• LinuxhHost Adapter to work with any login shell (#188)
• LinuxhHost Adapter needs to display long lines in pstree to successfully parse output (#188)

0.11.2 - 2020-04-23

Fixed

• fix signature of LinuxHost#info_where_owner

0.11.1 - 2020-03-18

Changed

• Only the version changed. Had to republish to rubygems.org

0.11.0 - 2020-03-18

Added

• Added directive prefixes to each adapter (e.g. #QSUB) (#161)
• LHA supports submit_host field in native (#164)
• Cluster files can be yaml or yml extensions (#171)
• Users can add a flag OOD_JOB_NAME_ILLEGAL_CHARS to sanitize job names (#183

Changed

• Simplified job array parsing (#144)

Fixed

• Issue where environment variables were not properly exported to the job (#158)
• Parsing bad cluster files (#150 and #178)
• netcat is no longer a hard dependency. Now lsof, python and bash can be used (153)
• GE crash when nil config file was given (#175)
• GE sometimes reported incorrect core count (#168)

0.10.0 - 2019-11-05

Added

• Added an adapter for submitting work on Linux hosted systems without using a scheduler

Fixed

• Fixed bug where an unreadable cluster config would cause crashes

0.9.3 - 2019-05-08

Fixed

• Fixed bug relating to cluster comparison

0.9.2 - 2019-05-08

Changed

• When squeue returns '(null)' for an account the Slurm adapter will now convert that to nil

0.9.1 - 2019-05-07

Added

• Added logic to OodCore::Job::ArrayIds to return an empty array when the array request is invalid

0.9.0 - 2019-05-04

Added

• Job array support for LSF and PBSPro
• Slurm adapter uses squeue owner filter (-u) for info_where_owner

Fixed

• Grid Engine adapter now starts scripts in the current directory like all other adapters
• Fixed issue where Slurm comment field might break job info parsing
• Fixed possible crash when comparing two clusters if the id of one of the clusters is nil
• Fixed bug with the live system test that impacted non-LSF systems
• Fixed bug with Slurm adapter when submit time is not available

0.8.0 - 2019-01-29

Added

• info_all_each and info_where_owner_each super class methods
• job array support for Torque, Slurm, and SGE (currently missing from LSF and PBSPro)
• OodCore::Job::Status#precedence for the ability to get an overall status for a group of jobs

Fixed

• Fix SGE adapter to specify -u '*' when calling qstat to get all jobs

0.7.1 - 2019-01-11

Fixed

• Fixed crash when libdrmaa is used to query for a job no longer in the queue

0.7.0 - 2018-12-26

Added

• Addition of an optional live system test of a configurable job adapter

Fixed

• Fix Torque adapter crash by fixing scope resolution on Attrl and Attropl
• Fix SGE adapter crash in OodCore::Job::Adapters::Sge::Batch#get_info_enqueued_job when libdrmma is not available (DRMMA constant not defined)

Changed

• Always set SGE_ROOT env var, for both SGE commands via popen and when using libdrmaa
• Use libdrmaa only when libdrmaa is set in the cluster config

0.6.0 - 2018-12-19

Added

• Added ability to override the default password length
• Merge the pbs-ruby gem removing that as a dependency, but adding FFI
• Added support for overriding resource manager client executables using bin_overrides in the cluster configs
• Add support for the Grid Engine resource manager (tested on GE 6.2u5 and UGE 8.0.1)

Fixed

• Fixed a bug in password creation where certain locales resulted in invalid passwords #91

0.5.1 - 2018-05-14

Fixed

• Fixed mistyped random_number call in VNC template. #88 (@travigd)

0.5.0 - 2018-04-30

Added

• Added missing "Waiting" state to the Torque adapter as :queued_held.

Changed

• Changed the "Waiting" state in the PBSPro adapter to :queued_held.

0.4.0 - 2018-04-20

Changed

• Updated Torque adapter to take into account the new Script#native format allowing for arrays. #65

0.3.0 - 2018-04-05

Added

• Basic multi-cluster support for LSF by specifying name of cluster for -m argument. #24
• Added OodCore::Job::Script#shell_path as an option to all adapters. #82
• Added header and footer options to a Batch Connect template. #64

Fixed

• Replaced Fixnum code comments with Integer. #67

0.2.1 - 2018-01-26

Changed

• Updated the date in the LICENSE.txt file.

Fixed

• Fixed bug where LSF adapter would sometimes return nil when getting job info. #75
• Fixed list of allocated nodes for LSF adapter when single node is expanded for each core. #71
• Clean up children processes in forked Batch Connect main script before cleaning up batch script. #69
• Fix bug when detecting open ports using the bash helpers in the Batch Connect template. #70

0.2.0 - 2017-10-11

Added

• Added Batch Connect helper function to wait for port to be used. #57
• Can include Batch Connect helper functions when writing to files or running remote code. #58
• The Batch Connect helper functions are now available to use in the forked Batch Connect main script. #59
• The host and port environment variables are now available to use in the forked Batch Connect main script. #60

Fixed

• Fixed a bug with the nc command used in the Batch Connect helper functions for CentOS 7. #55
• Fixed not correctly detecting open ports for specific ip address in Batch Connect helper functions. #56
• Fixed a bug when parsing nodes in the Slurm adapter. #54

0.1.1 - 2017-09-08

Fixed

• fix crash when calling Adapters::Lsf#info(id:) with "invalid" id
• optimize Adapters::Lsf#info_where_owner by using bjobs -u $USER when a single user is specified

0.1.0 - 2017-07-17

Changed

• Setting the host in a batch_connect batch script can now be directly manipulated through the set_host initialization parameter. #42

0.0.5 - 2017-07-05

Added

• Add wallclock time limit to OodCore::Job::Info object.
• Add further support for the LSF adapter.
• Add a new Batch Connect template feature that builds batch scripts to launch web servers.
• Add support for the PBS Professional resource manager.
• Add method to filter list of batch jobs for a given owner or owners.

Changed

• Torque adapter provides nodes/procs info if available for non-running jobs.
• Slurm adapter provides node info if available for non-running jobs.
• Changed the CHANGELOG.md formatting.

Removed

• Remove deprecated tests for the Slurm adapter.

Fixed

• Fix parsing bjobs output for LSF 9.1, which has extra SLOTS column.

0.0.4 - 2017-05-17

Changed

• By default all PBS jobs output stdout & stderr to output path unless an error path is specified (mimics behavior of Slurm and LSF)

Removed

• Remove OodCore::Job::Script#min_phys_memory due to lack of commonality across resource managers.
• Remove OodCore::Job::Script#join_files due to lack of support in resource managers.

0.0.3 - 2017-04-28

Added

• Provide support for Slurm conf file.

Fixed

• Correct code documentation for Script#min_phys_memory.
• Add fix for login feature being allowed on all clusters even if not defined.

0.0.2 - 2017-04-27

Removed

• Remove the OodCore::Job::NodeRequest object.

0.0.1 - 2017-04-17

Added

• Initial release!