Change width of Manhatan plots

[adbeggs]

Hi,

I apologise for such a simple question, but I can't seem to work out how to modify the plotting width of Manhattan plots so the X axis (chromosomes) is not squashed:

If I plot within a X windows session I can manually drag it so it is the right width thus:

Is there any way to set this in CNVpytor so the output doesn't look so compressed? I am trying to automate it as part of a pipeline. Many thanks in advance

[arpanda]

Hi @adbeggs,
The panel_size parameter allows you to adjust the height and width. When saving results to a file, it uses the panel_size values (default: 8, 6). Here’s an example for the view mode:

cnvpytor -root <pytor file> -view 100000
cnvpytor> set panel_size 12 6
    * panel_size: [12.0, 6.0]
cnvpytor> set output_filename test.png
    * output_filename: test.png
cnvpytor> manhattan