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pluto-demo.jl
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pluto-demo.jl
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### A Pluto.jl notebook ###
# v0.19.27
using Markdown
using InteractiveUtils
# ╔═╡ 9ee33338-6985-4745-ab74-7caeac73496e
begin
using MLJ
using Random
using DataFrames
using ModalDecisionTrees
using SoleModels
# Load an example time-series classification dataset as a tuple (DataFrame, Vector{String})
X, y = SoleData.load_arff_dataset("NATOPS")
end
# ╔═╡ 65141ec2-4da9-11ee-2a0a-8974a3ec37da
md"""
# ModalDecisionTrees.jl Demo
"""
# ╔═╡ dea67564-e905-4a49-9717-ca8071a4d489
md"""
## Learning and inspecting a Modal Decision Tree
"""
# ╔═╡ 99b1da9b-517a-4a84-8d0c-26e9f9ff6e15
# Instantiate the modal extension of CART, that uses relations from the coarser Interval Algebra "IA7"
model = ModalDecisionTree(; relations = :IA7, downsize = (15,))
# ╔═╡ a00c4abe-5534-4c42-9464-d5a6867b9802
begin
# Randomly split the data: 20% training, 80% testing
N = nrow(X)
perm = randperm(Random.MersenneTwister(1), N)
train_idxs, test_idxs = perm[1:round(Int, N*.2)], perm[round(Int, N*.2)+1:end]
mach = machine(model, X, y)
# Train.
@time fit!(mach; rows=train_idxs)
# Compute accuracy
yhat = predict_mode(mach, X[test_idxs,:])
MLJ.accuracy(yhat, y[test_idxs])
end
# ╔═╡ 7655458a-d5af-44d9-9ff6-74db67f3d5d4
# Print model
report(mach).printmodel()
# ╔═╡ 66ec0d97-a221-4363-a21d-1c15835645d2
begin
# Print model in a condensed form (useful for checking which variables were useful)
report(mach).printmodel(false)
# Feature importances
feature_importances(mach)
end
# ╔═╡ b6d6ed79-9abc-47a6-bbbc-1a1610ffb830
begin
# Access model
tree_train = report(mach).model
# Extract the corresponding ruleset
ruleset = listrules(tree_train);
# Print ruleset
printmodel.(ruleset; show_metrics = true, threshold_digits = 2, variable_names_map = [names(X)], parenthesize_atoms = false);
end
# ╔═╡ 00310a1c-c4f4-43bc-a60c-a6113434f242
begin
# Sprinkle the model with the test instances!
predictions, tree_test = report(mach).sprinkle(X[test_idxs,:], y[test_idxs]);
# Extract ruleset and print its metrics
ruleset_test = listrules(tree_test)
printmodel.(ruleset_test; show_metrics = true, threshold_digits = 2, variable_names_map = [names(X)]);
end
# ╔═╡ b3417b90-c910-407a-939b-5190602c5899
begin
# In the classification scenario, rules for the same class can be joined via logical conjunction (∨)
joined_ruleset_test = joinrules(ruleset_test)
printmodel.(joined_ruleset_test; show_metrics = true, variable_names_map = [names(X)], threshold_digits = 3);
end
# ╔═╡ 3cdf0a35-edd0-4a02-9410-94e828d0f519
begin
# This model has a decent accuracy by the way. TODO
evaluate!(mach,
resampling=StratifiedCV(; nfolds = 3, shuffle=true),
measures=[accuracy],
verbosity=0,
check_measure=false
)
end
# ╔═╡ 00000000-0000-0000-0000-000000000001
PLUTO_PROJECT_TOML_CONTENTS = """
[deps]
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ModalDecisionTrees = "e54bda2e-c571-11ec-9d64-0242ac120002"
Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
SoleModels = "4249d9c7-3290-4ddd-961c-e1d3ec2467f8"
[compat]
DataFrames = "~1.6.1"
MLJ = "~0.19.5"
ModalDecisionTrees = "~0.1.7"
SoleModels = "~0.4.0"
"""
# ╔═╡ 00000000-0000-0000-0000-000000000002
PLUTO_MANIFEST_TOML_CONTENTS = """
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