patchlib functions

Main Functions

patchlib.vol2lib transform a N-D volume into a patch library
patchlib.volStruct2lib transform a volStruct into a patch library
patchlib.grid grid of patch starting points for N-D volume
patchlib.stackPatches stack patches in layer structure
patchlib.volknnsearch k-NN search of patches in source given a set of reference volumes
patchlib.patchmrf mrf patch inference on patch candidates on a grid
patchlib.quilt quilt or reconstruct volume from patch indexes in library
patchlib.gridsize grid of patches that fit into a volume

Visualization

patchview.patchesInImage visualize 2D patches in an image
patchview.patchMatches2D display 2D patches matching an original patch
patchview.patches2D show 2D patches in a subplot grid
patchview.layers2D view layers (as returned by patchlib.stackPatches)
patchview.patchRef2D
patchview.grid2D visualize the patch grid on top of a volume.
patchview.corresp2D visualize correspondances in 2D
patchview.drawPatchRect draw rectangles in the current axis
patchview.patch3D visualize a 3D patch
patchview.votehist see histograms of the votes for locations (interactive)

Helpers

patchlib.overlapkind overlap amount to/from pre-specified overlap kind
patchlib.guessPatchSize guess the size of a patch from nVoxels
patchlib.patchCenterDist compute the distance to the center of a patch
patchlib.grid2volSize volume size from number of patches
patchlib.isvalidoverlap check overlap variable
patchlib.grid2volSize volume size from patch grid size
patchlib.corresp2disp transform locations to displacement.
patchlib.interpDisp interpolate displacement.
patchlib.patchesmat2cell
patchlib.l2overlapdst
patchlib.lib2patches (still in draft mode)
'patchlib.locvotes' votes given volume location

corresp2disp

Under Construction

viewPatchNeighbors3D