From 87eb214b2a9aaff031397f0a4417c2129fa71b69 Mon Sep 17 00:00:00 2001 From: Matthew Templeton Date: Mon, 10 Jul 2023 11:04:15 -0400 Subject: [PATCH 1/3] modified: adsingestp/parsers/jats.py new file: tests/stubdata/input/jats_iop_apj_923_1_47.xml new file: tests/stubdata/output/jats_iop_apj_923_1_47.json modified: tests/test_jats.py --- adsingestp/parsers/jats.py | 11 +- .../stubdata/input/jats_iop_apj_923_1_47.xml | 708 ++++++++++++++++++ .../output/jats_iop_apj_923_1_47.json | 282 +++++++ tests/test_jats.py | 4 + 4 files changed, 1000 insertions(+), 5 deletions(-) create mode 100644 tests/stubdata/input/jats_iop_apj_923_1_47.xml create mode 100644 tests/stubdata/output/jats_iop_apj_923_1_47.json diff --git a/adsingestp/parsers/jats.py b/adsingestp/parsers/jats.py index 5865d89..3f108e0 100644 --- a/adsingestp/parsers/jats.py +++ b/adsingestp/parsers/jats.py @@ -336,11 +336,12 @@ def parse(self, article_metadata): # check and see if the publisher defined an email tag inside an affil (like IOP does) nested_email_list = aff.find_all("ext-link") for e in nested_email_list: - key = e["id"] - value = e.text - # build the cross-reference dictionary to be used later - self.email_xref[key] = value - e.decompose() + if e.get("ext-link-type", None) == "email": + key = e["id"] + value = e.text + # build the cross-reference dictionary to be used later + self.email_xref[key] = value + e.decompose() key = aff.get("id", default_key) # special case: get rid of ... diff --git a/tests/stubdata/input/jats_iop_apj_923_1_47.xml b/tests/stubdata/input/jats_iop_apj_923_1_47.xml new file mode 100644 index 0000000..f56b367 --- /dev/null +++ b/tests/stubdata/input/jats_iop_apj_923_1_47.xml @@ -0,0 +1,708 @@ + + +
apjThe Astrophysical JournalAPJAstrophys. J.0004-637X1538-4357The American Astronomical Societyapjac25ea10.3847/1538-4357/ac25eaac25eaAAS31921340Stars and Stellar Physics + 26Aluminum from Massive Binary Stars. II. Rotating Single Stars Up to Core Collapse and Their Impact on the Early Solar SystemBrinkmanHannah E.12hannah.brinkman@csfk.orgHartoghJ. W. den1DohertyC. L.130000-0002-9048-6010PignatariM.14560000-0002-6972-3958LugaroM.137 + +Konkoly Observatory, Research Centre for Astronomy and Earth Sciences (CSFK), Eötvös Loránd Research Network (ELKH), Konkoly Thege Miklós út 15-17, H-1121 Budapest, Hungary; hannah.brinkman@csfk.org + + +Graduate School of Physics, University of Szeged, Dom tér 9, Szeged, 6720 Hungary + + +School of Physics and Astronomy, Monash University, VIC 3800, Australia + + +E.A. Milne Centre for Astrophysics, Department of Physics and Mathematics, University of Hull, HU6 7RX, UK + + +NuGrid Collaboration, http://nugridstars.org + + +Joint Institute for Nuclear Astrophysics, Center for the Evolution of the Elements, Michigan State University, 640 South Shaw Lane, East Lansing, MI 48824, USA + + +ELTE Eötvös Loránd University, Institute of Physics, Budapest 1117, Pázmány Péter sétány 1/A, Hungary + 122021091220219231473042021792021892021© 2021. The American Astronomical Society. All rights reserved.2021This article is available under the terms of the IOP-Standard License.Abstract

Radioactive nuclei were present in the early solar system (ESS), as inferred from analysis of meteorites. Many are produced in massive stars, either during their lives or their final explosions. In the first paper of this series (Brinkman et al. 2019), we focused on the production of 26Al in massive binaries. Here, we focus on the production of another two short-lived radioactive nuclei, 36Cl and 41Ca, and the comparison to the ESS data. We used the MESA stellar evolution code with an extended nuclear network and computed massive (10–80 M + ), rotating (with initial velocities of 150 and 300 km s−1) and nonrotating single stars at solar metallicity (Z = 0.014) up to the onset of core collapse. We present the wind yields for the radioactive isotopes 26Al, 36Cl, and 41Ca, and the stable isotopes 19F and 22Ne. In relation to the stable isotopes, we find that only the most massive models, ≥60 and ≥40 M + give positive 19F and 22Ne yields, respectively, depending on the initial rotation rate. In relation to the radioactive isotopes, we find that the ESS abundances of 26Al and 41Ca can be matched with by models with initial masses ≥40 M + , while 36Cl is matched only by our most massive models, ≥60 M + . 60Fe is not significantly produced by any wind model, as required by the observations. Therefore, massive star winds are a favored candidate for the origin of the very short-lived 26Al, 36Cl, and 41Ca in the ESS.

unified-astronomy-thesaurushttp://astrothesaurus.org/uat/1636Stellar winds1636http://astrothesaurus.org/uat/1599Stellar evolution1599http://astrothesaurus.org/uat/1616Stellar nucleosynthesis1616http://astrothesaurus.org/uat/1528Solar system1528http://astrothesaurus.org/uat/732Massive stars732http://astrothesaurus.org/uat/1629Stellar rotation1629EC ∣ European Research Council (ERC)https://doi.org/10.13039/501100000781 + 724560ccc0004-637X/21/47+14$33.00crossmarkyesdataset + + dataset + + dataset + +
Introduction

Radioactive isotopes with short half-lives of less than a few million years (hereafter short-lived radioactive isotopes (SLRs)), and specifically the famous case of 26Al with a half-life of 0.72 Myr (Basunia & Hurst 2016), but also 36Cl, 41Ca, and 60Fe, with half-lives 0.301 Myr (Nica et al. 2012), 0.0994 Myr (Nesaraja & McCutchan 2016), and 2.62 Myr (Rugel et al. 2009), respectively, were present in the early solar system (ESS). Their abundances are inferred from meteoritic data reporting excesses in their daughter nuclei, for example, the ESS 26Al/27Al ratio has been measured in calcium-aluminum-rich inclusions (CAIs) to be equal to (5.23 ±0.13) × 10−5 (Jacobsen et al. 2008). These radioactive isotopes represent the fingerprint of the local nucleosynthesis that occurred nearby at the time and place of the birth of the Sun. Therefore, they give us clues about the environment and the circumstances of such birth (Adams 2010).

These four isotopes can be made in massive stars and expelled both by their winds, mainly during the Wolf-Rayet (WR) phase of stars with an initial mass ≥35 M + and/or due to binary interactions Brinkman et al. 2019, and in equal or larger amounts by their final core-collapse supernova (CCSN; Meyer & Clayton 2000; Lugaro et al. 2018 and T. Lawson et al. 2021, in preparation). While the 26Al, 36Cl, and 41Ca are ejected in significant amounts by both the wind and the CCSN, the amount of 60Fe in the stellar winds is negligible compared to that in the CCSN ejecta. This is because 60Fe is produced via neutron captures on the unstable 59Fe, and for this nucleus to capture a neutron instead of decaying, higher neutron densities (>1010–11 cm−3) are required than those produced during core He burning. Therefore, 60Fe is only produced in carbon shell burning and in explosive He- and C-burning conditions (Limongi & Chieffi 2006; Tur et al. 2010; Jones et al. 2019) toward the end of the evolution. Instead, large amounts of 26Al are produced during H burning by proton captures on 25Mg and expelled by the winds. The majority of the 26Al is expelled together with 35Cl and 40Ca, which are produced during He burning by neutron captures on the proceeding stable isotopes, 35Cl and 40Ca, respectively (e.g., Arnould et al. 1997, 2006; Gounelle & Meynet 2012; Brinkman et al. 2019).

Massive star winds have been suggested as a favored site of the 26Al in the ESS (e.g., Arnould et al. 1997, 2006; Gaidos et al. 2009; Gounelle & Meynet 2012; Young 2014) also because they do not eject 60Fe. Candidate CCSN sources of 26Al predict, instead, a more significant ejection of 60Fe, leading to a 60Fe/56Fe ratio orders of magnitude above the value observed in the ESS of ≃ 10−8 (Tang & Dauphas 2012; Trappitsch et al. 2018). Also, the ESS 60Fe/26Al ratio is roughly two to three orders of magnitude lower than that observed via γ-ray, which sample the average galactic medium (Diehl 2013; Wang et al. 2020), and predicted by CCSN models (Sukhbold et al. 2016; Austin et al. 2017). This suggests that less 60Fe was present in the ESS as compared to the galactic average, and/or that extra source(s) of 26Al were present at the time of the birth of the Sun.

Arnould et al. (1997, 2006) considered production of several SLRs, including 36Cl and 41Ca, by WR winds in both nonrotating and rotating models and concluded that these could have been the sources of these SLRs in the ESS. More recent studies have focused on 26Al only (Gounelle & Meynet 2012) and also concluded that WR winds are a possible source. In our first paper in this series, Brinkman et al. (2019, hereafter Paper I), we also focused on 26Al and investigated how binary interactions between nonrotating massive stars can influence its wind yields. We showed that these interactions can lead to a significant increase in the 26Al wind yields in stars of masses 10–35 M + . For more massive stars, which become WR stars, the effect of binary interaction is almost negligible.

In the present work we extend Paper I by computing the evolution of stellar models up to core collapse with a larger network of nuclear species and reactions, to calculate the wind yields of the SLRs 36Cl, 41Ca, and 60Fe. We also include rotation in this study as this impacts stellar evolution and the winds (see, e.g., Maeder & Meynet 2012, for an overview). Our revision of the production of these SLRs is timely because updates in the ESS values of 36Cl and 41Ca have become recently available (Liu 2017; Tang et al. 2017). Moreover, the implementation of the mass-loss rates and of rotation represent some of the main uncertainties in the models of massive stars, and the differences obtained with different stellar evolution codes need to be considered carefully. We will therefore compare our results to those available in the literature.

With the extended nuclear network and calculations to beyond H burning, we also present new predictions for two stable isotopes that are produced during He burning and can be present in the stellar winds: 19F and 22Ne. These are of interest because Meynet & Arnould (2000) have shown that WR stars can contribute significantly to the galactic 19F abundance, while Palacios et al. (2005) found that WRs are unlikely to be the source of galactic 19F, when including updated mass-loss prescriptions and reaction rates. Recently, the discussion around 19F was rekindled by Jönsson et al. (2014a, 2014b, 2017) and Abia et al. (2019), who reanalyzed observations of 19F and proposed that asymptotic giant branch stars are the most likely source of cosmic 19F. Still, due to the remaining uncertainty in both the mass-loss prescriptions and the reaction rates (see, e.g., Stancliffe et al. 2005; Ugalde et al. 2008), WRs cannot be excluded as the sources of galactic 19F (for a recent overview, see, e.g., Ryde et al. 2020). As for 22Ne, there are puzzling observations of an anomalous 22Ne/20Ne ratio in cosmic rays, which is a factor of ∼5 higher than in the solar wind (Prantzos 2012). The comparison to model predictions may be a key to finding the source of cosmic rays in relation to OB associations of massive stars.

This paper structure is as follows: In Section 2, we describe the method and the physical input of our models. In Section 3, we discuss the stellar evolution results and all the relevant stellar evolution details for our models, and compare them to results from the literature. In Section 4, we present the nucleosynthetic yields of our models and compare these to various studies in the literature. In Section 5, we compare our findings to the abundances of the SLRs in the ESS and discuss which stars are good candidates to explain them. In Section 6, we end with our conclusions.

Method and Input Physics

As in Paper I, we have used version 10398 of the MESA stellar evolution code (Paxton et al. 2011, 2013, 2015, 2018) to calculate massive star models with and without the effects of rotation. We have included the extended nuclear network of 209 isotopes within MESA such that the stellar evolution and the detailed nucleosynthesis are solved simultaneously. The input physics we used for the single massive stars is described in the next section. Only the key input parameters and the changes compared to the input physics of Paper I are discussed.

The inlist files used for the simulations are available on Zenodo under a Creative Commons 4.0 license: doi: 10.5281/zenodo.5497213.

Input Physics

The initial masses of our models are 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, and 80 M + . The initial composition used is solar with Z = 0.014, following Asplund et al. (2009). For the initial helium content we have used Y = 0.28. Our nuclear network contains all the relevant isotopes for the main burning cycles (H, He, C, Ne, O, and Si) to follow the evolution of the star in detail up to core collapse. All relevant isotopes connected to the production and destruction of 26Al, 36Cl, 41Ca, 19F, 22Ne, and 60Fe are also included into our network. Including the ground and isomeric states of 26Al, the total nuclear network contains therefore the following 209 isotopes: n, 1,2H, 3,4He, 6,7Li, 7−10Be, 8−11B, 12−14C, 13−16N, 14−19O, 17−20F, 19−23Ne, 21−24Na,23−27Mg, 25Al, 26Al + g + ,26Al + m + ,27,28Al, 27−33Si, 30−34P, 31−37S, 35−38Cl, 35−41Ar, 39−44K, 39−49Ca, 43−51Sc, 43−54Ti, 47−58V, 47−58Cr, 51−59Mn, 51−66 Fe, 55−67Co, 55−69Ni, 59−66Cu, and 59−66Zn. Following Farmer et al. (2016, and references therein) a nuclear network of 204 isotopes is optimal for the full evolution of a star, especially because it includes isotopes that influence Y + e, which are important for the core collapse (see Heger et al. 2000).

We changed the reaction rate library from NACRE to the JINA reaclib (Cyburt et al. 2010), version 2.2. The main difference that will affect the evolution is the 14N(p,γ)15O rate, which is updated to (Imbriani et al. 2005). For 19F, we use the 19F(α,p)22Ne from Ugalde et al. (2008), included in the JINA reaclib.

As in Paper I, we have used the Ledoux criterion to establish the location of the convective boundaries. The semi-convection parameter, α + sc, was set to 0.1 and the mixing length parameter, α + mlt, to 1.5. We make use of overshooting via the step-overshoot scheme with α + ov = 0.2 for the central burning stages. For better convergence of the models, especially in the later stages of the evolution, we switched off the overshoot on the helium burning shell and the later burning shells and the overshoot on the hydrogen shell was reduced to α + ov = 0.1.

We also updated our wind mass-loss scheme. For the hot phase (T + eff ≥ 11 kK), we use the prescription given by Vink et al. (2000, 2001) and for the cold phase (T + eff ≤ 1 kK) we use the prescription given by Nieuwenhuijzen & de Jager (1990). For the WR phase we now use the prescription given by Nugis & Lamers (2000) instead of that given by Hamann et al. (1995). All phases of the wind have a metallicity dependence + + + + ṀZ0.85 + + following Vink et al. (2000) and Vink & de Koter (2005).

We have evolved the stars to the onset of core collapse, using an (iron-)core-infall velocity of 300 km s−1 as the termination point of our simulations.

Rotation

From observations, we know that massive stars rotate, and often at rates high enough to influence their evolution (see, e.g., Maeder & Meynet 2000b, for a review). In Paper I, we did not include rotation because we focused on the impact of binary interactions. Here, we do include rotation but do not consider full binary interactions. Rotation in MESA is implemented as in Heger et al. (2000). The two variables f + + c + and f + + μ + are set to their commonly used values 1/30 and 0.05 (as calibrated by Heger et al. 2000). We include the Taylor–Spruit dynamo for angular momentum transport, following the implementation of Heger et al. (2005). The Taylor–Spruit dynamo is included because this mechanism allows for efficient transport of angular momentum, which is needed to allow for stellar evolution models to match observed rotation rates in many different stellar objects in different stellar evolutionary phases (see, e.g., recent publications of Aerts et al. 2019 and Belczynski et al. 2020). We use an initial rotational velocity of 150 and 300 km s−1, to cover the rotational velocities observed on the main sequence, which are between 200 and 250 km s−1 (Arnould et al. 2006). For the models that include the effects of rotation, the wind will receive a rotational boost. MESA includes the boost as given by Langer (1998). However, Maeder & Meynet (2000a) pointed out that some effects have been excluded in this treatment, and therefore we implement the rotational boost as in their Equation (4).30. We follow the implementation for MESA by Keszthelyi et al. (2020), to which we have added the temperature dependence of the empirical alpha parameter, determined by Lamers et al. (1995) + 8 + +

We implemented a step function to connect their Equations (2) and (3) at log(T + eff) = 4.325, to match the data presented in their Figure 7.

Below log(T + eff) = 3.90, the alpha parameter is undefined and we set it to 1, which makes the boost disappear. Above log(T + eff) = 4.7, the alpha parameter is again undefined. Here, we have set it to 0.52, extrapolating the results of Lamers et al. (1995).

Yield Calculations

Our focus is on the pre-supernova isotopic yields from the winds. To calculate these yields, we integrate over time, because wind mass loss is a continuous process. For the stable isotopes, there are two yields to consider, the total yield and the net yield. The total yield is calculated as described above. The net yield is the total yield minus the initial abundance present in the star. For the SLRs, the net yield is identical to the total yield because there is no initial abundance present in the stars for these isotopes. The total yields and the relevant initial abundances are presented in Section 4.

Stellar Models: Results and Discussion

In this section, we discuss the stellar evolution details of our models and the impact of rotation on them. In Table 1, selected relevant information of our models regarding the stellar evolution is presented: the total stellar mass and core mass at the end of the H, He, and C-core burning, the duration of these burning phases, the total lifetime, the total mass loss, and the compactness parameter. The start and end points of the different burning phases are defined as in Götberg et al. (2018). + 9 + +

For completeness, the end of the core H burning stage is defined as when the central helium abundance is larger than 0.98 and the total luminosity produced by nuclear burning is larger than 0.5 the luminosity of the star, the end of He-core burning when the central carbon abundance is 0.4, the end of carbon burning when the central carbon abundance is 0.01, and the end of oxygen burning when the central oxygen abundance is 0.04.

By the end of carbon burning the mass-loss phase has mostly ended (see Figure 3) and all our models have finished this stage. We then continued our models until a core-infall velocity of 300 km s−1. In total, 31 out of our 36 models have reached this point, with numerical issues halting the calculations of the remaining five models slightly prior to this stage.

Selected Details of the Evolution of Our Stellar Models

+ M + ini + + V + ini + + t + H + + M + + c,He + + M + *,H + + t + He + + M + + c,C + + M + *,He + + t + tot + + M + + c,O + + M + *,C + ΔM + ξ + 2.5 +
(M + )(km s−1)(Myr)(M + )(M + )(Myr)(M + )(M + )(Myr)(M + )(M + )(M + )
100 + a + + 23.001.839.781.981.529.1125.371.389.040.966.09e-3
150 + a + + 23.951.929.751.891.589.0626.211.348.991.017.69e-3
30026.962.049.641.691.848.6228.991.918.551.450.017
+
+
15012.153.6214.580.963.4111.4913.261.7111.353.650.098
15012.493.7314.500.923.5411.2213.561.6011.083.910.078
30014.054.0914.230.864.049.9615.031.669.805.200.086
+
+
2008.535.7319.120.665.6611.249.292.4911.028.980.23
1508.685.8218.960.655.8310.779.431.9210.559.440.16
300 + a + + 9.876.4518.390.606.629.3910.552.999.2810.710.40
+
+
250 + a + + 6.807.9923.200.538.1311.047.411.7110.9214.070.12
1506.968.2322.870.538.0611.277.561.7711.0413.950.11
3007.688.8622.120.508.6311.068.251.9010.9614.030.11
+
+
300 + a + + 5.8010.3526.890.4710.7313.566.322.4413.4716.520.23
1506.0010.8026.130.4510.7013.256.502.2313.1216.870.22
3006.4711.2925.390.4410.8113.246.962.1613.1216.860.19
+
+
3505.1512.7430.380.4212.9515.645.623.0015.4619.510.18
1505.2713.0529.750.4112.5515.155.732.7915.0019.980.23
3005.7013.9029.090.4012.1214.836.152.6914.6520.330.29
+
+
4004.6915.1733.230.3913.6316.405.123.2116.2423.740.19
1504.7815.4932.550.3813.2116.115.203.0716.0423.930.23
3005.1516.3930.940.3713.7216.705.563.0916.6523.320.26
+
+
4504.3517.5735.740.3614.8517.954.763.4317.9027.060.26
1504.4818.2834.280.3515.2618.204.883.2818.1326.820.26
3004.8119.2234.030.3515.5718.635.203.6218.5526.410.31
+
+
5004.0920.0537.930.3516.8419.924.483.7719.8730.070.31
1504.2120.7935.930.3416.6819.804.593.5319.7130.230.30
3004.4721.7736.260.3817.7020.814.853.9920.7329.210.33
+
+
6003.7125.0441.390.3319.4922.764.074.5322.6737.250.31
1503.7825.8443.080.3220.0923.374.144.6023.2936.630.32
3004.0225.8934.260.3513.1916.014.403.1515.9343.990.23
+
+
7003.4330.2950.320.3122.8626.363.7815.14 + b + + 26.2543.650.46
1503.5330.8243.310.3216.8920.083.893.8819.9949.920.32
3003.6728.8033.480.3611.1013.684.072.7413.6056.300.29
+
+
8003.2434.9850.720.3120.6824.103.584.8423.9955.900.36
1503.3630.3333.280.3610.6713.243.762.4513.1766.720.25
3003.5421.9925.200.399.1011.543.972.0611.4668.420.16

Typeset image

+ Notes. + M + ini is the initial mass in M + . V + ini is the initial rotational velocity in kilometers per second. t + H, t + He, and t + tot are the duration of hydrogen burning, helium burning, and the total evolution time in million years, respectively. M + *,H, M + *,He, and M + *,C are the masses of the stars at the end of their respective burning phases. M + + c,He, M + + c,C, and M + + c,O are the masses of the hydrogen-depleted core, the helium-depleted core, and the carbon-depleted core at the end of the corresponding burning phases in M + . ΔM is the total mass lost in M + . ξ + 2.5 is the compactness of the star at the final model.

This run was terminated before core collapse was reached due to numerical difficulties; however, negligible mass loss is expected after this point.

This run experienced computational difficulties in the final phases, leading to a much larger M + + c,O than for any of the other models.

The duration of hydrogen burning, t + H (Column 3 of Table 1), is shown in Figure 1(a). For all initial masses, t + H increases with the rotational velocity. The effect is the strongest at the lower mass end (17% for 10 M + ) and small for the three highest masses of our grid (9% for 80 M + ). The increasing duration of the main sequence is due to rotational mixing. More hydrogen is mixed into the core from the envelope, adding more fuel to the core, and extending this burning phase. Together, this leads to larger hydrogen-depleted cores, M + + c,He, at the end of the main sequence (dotted lines in Figure 2 and Column 4 in Table 1). The only exceptions to this trend are the two most massive models, 70 and 80 M + , which have a longer main sequence yet smaller helium-core masses at the end of hydrogen burning when rotating.

The duration of core hydrogen burning, t + H (solid lines in the top panel) and the duration of core helium burning, t + He (dashed lines in the bottom panel) for the three rotational velocities as a function of the initial mass.

The total stellar mass M + *,H, (solid lines) and the the hydrogen-depleted core mass M + *,He, (dashed lines) at the end of the main sequence for the three rotational velocities as a function of the initial mass.

This is especially noticeable for the highest initial rotational velocity. In these two most massive models, the increased mass-loss limits the core growth. With more mass lost from the star, there is less fuel to add to the core and to increase its mass. This is shown by the solid lines in Figures 2 and 3, which provide the final mass at the end of the main sequence, M + *,H (Column 5 of Table 1) and the mass loss on the main sequence (M + iniM + *,H), respectively. For the models below ∼50 M + , there is little difference between in the mass losses between the rotating and nonrotating models. The difference in final mass at the end of the main sequences ranges between 1% and 4% for these stars. Above ∼50 M + , the extra mass loss for the rotating models becomes more significant, up to 50% more for our most massive model.

Mass loss for three different phases, the main sequence (solid lines, M + iniM + *,H), helium burning (dashed lines, M + *,HM + *,He), and carbon burning and beyond (dotted lines, M + *,HeM + *,f + ), as a function of the initial mass. The final mass (M + *,f + ) is the difference between the initial mass and the total mass loss, M + in–ΔM.

The mass loss between the end of the main sequence and the end of helium burning, M + *,HM + *,He, represented by the dashed lines in Figure 3, is comparable to that between the rotating and nonrotating models with the same initial mass. The exceptions are again the two most massive models, for which the mass loss between the end of H and the end of He burning reduces with the increasing rotational velocity. This is because these models have already lost more mass on their main sequence (solid lines in Figure 3), and as a consequence, experience less mass loss afterward.

As a result of the larger core masses at the end of hydrogen burning, the helium burning lifetime, t + He, becomes shorter for most of the models with rotation (Figure 1(b) and Table 1). This is because the heavier the cores, the faster the burning. The three most massive models, however, the rotating models have smaller helium-core masses at the end of hydrogen burning compared to their nonrotating counterparts. For these masses, the rotating models have longer t + He than their nonrotating counterparts. The turnover point is around ∼50 M + , as can be seen in Figure 1(b).

After helium burning barely any mass is lost from the stars (dotted lines in Figure 3). The helium-depleted core at the end of helium burning, M + + c,C (Column 7 in Table 1) increases in mass for the models below ∼50 M + . For three highest masses, however, the mass of the helium-depleted cores decreases with the initial rotational velocity, which is a direct result of the smaller helium cores earlier.

We note that the mass of the carbon depleted core, M + + c,O (reported in Column 10) is very sensitive to mixing in the final phases of the stellar evolution and a small fluctuation in the mixing can easily alter this value.

The mass loss during the main sequence always increases with higher rotational velocities (solid lines in Figure 3). The same applies for the total lifetime of the star, t + tot (Column 9 of Table 1). On the other hand, the total mass loss during the whole evolution, ΔM, (see Table 1) is not always larger for the higher rotation rates.

The last column of Table 1 gives the compactness parameter, ξ + 2.5. This parameter, as defined by O’Connor & Ott (2011) in their Equation (10), determines how compact the core of the star is just before the collapse and therefore how difficult it is to explode the star. The compactness is sensitive to small changes in the structure, and is therefore strongly dependent on the model parameters and the codes used (see e.g., Sukhbold et al. 2016; Limongi & Chieffi 2018 and Schneider et al. 2021).

Comparison to Other Data Sets

We compare our results primarily to those of Ekström et al. (2012, hereafter E12) calculated using the GENEC stellar evolution code, and Limongi & Chieffi (2018, hereafter LC18) calculated with the FRANEC stellar evolution code, for three reasons. The first is that both studies present rotating and nonrotating massive star models until the late phases of evolution. The second is that the implementation of rotation differs in these codes compared to what is used in MESA. Specifically, the treatment of rotation in MESA is based on a diffusive approximation, while in GENEC and FRANEC it is based on diffusion advection approach (Maeder & Zahn 1998; Paxton et al. 2013), with it well established that the impact of rotation on stellar model computations varies depending on which rotational mixing approach is used (see, e.g., Maeder & Meynet 2000b). Finally, all the stellar evolution details from these two studies are publicly available, though for E12 we do not have yields for 36Cl, 41Ca, and 60Fe. We compare our models to those from the literature at solar metallicity (taken to be either Z = 0.014 or 0.02, depending on the source).

The E12 models have an initial rotational velocity of 0.4ω + crit (corresponding to ∼260–350 km s−1). The LC18 models have the same initial rotational velocities of 150 and 300 km s−1, as our models.

Our models show similar trends as in those works, such as the extended duration of the main sequence and the increased mass loss in the early phases of the evolution. Overall, all the different models show similar main-sequence lifetimes. However, the choice of mass-loss prescription makes a big difference between the sets. The LC18 models lose much more mass in the early phases when rotation is included. When looking at their Figure 7, their lowest mass models including rotation move up almost vertically in the Hertzsprung–Russell diagram at the end of the main sequence. This leads to a strong increase in the mass loss, which is not seen in our models nor in those by E12.

Stellar Yields: Results and Discussion

In this section we present and discuss the wind yields for 26Al, 19F, 22Ne, 36Cl, and 41Ca from our models and compare them to other studies in the literature. We do not present the 60Fe yields in quantitative detail because our models confirm all the previous results that this isotope is not ejected in the winds (the maximum yield we found is 4.55 × 10−10 + M + for the nonrotating 70 M + model). In Table 2, the yields of the five isotopes and the initial abundances of 19F and 22Ne are presented. The complete set of wind yields for all isotopes and models presented here, are available on Zenodo under a Creative Commons 4.0 license: doi: 10.5281/zenodo.5497258. As discussed in Section 3, for the low-mass end, 10–35 M + , of the stars we investigate, most of the mass is lost between the main sequence and the onset of helium burning. At the high mass end, ∼35–80 M + , instead, the stars become WR stars and continue to lose mass even during and shortly after helium burning, stripping away not only the hydrogen-rich envelope, but also the top of the hydrogen-depleted core. This strongly impacts the yields of these stars, especially for the isotopes synthesized after hydrogen burning.

Isotopic Yields in M + +

+ M + ini + + V + ini + + 19Fini + + 19F + 22Neini + + 22Ne + 26Al + 36Cl + 41Ca
(M + )(km s−1)(M + )(M + )(M + )(M + )(M + )(M + )(M + )
1004.67e-064.61e-078.90e-48.47e-057.19e-118.82e-237.90e-23
1504.67e-064.71e-078.90e-48.68e-052.78e-101.11e-221.29e-22
3004.68e-064.20e-078.92e-47.77e-051.40e-101.67e-221.70e-22
+
+
1506.42e-061.69e-061.32e-33.12e-48.85e-093.00e-221.41e-21
1506.42e-061.74e-061.32e-33.24e-41.47e-085.12e-222.10e-21
3006.45e-061.21e-061.33e-32.26e-42.34e-085.32e-223.06e-21
+
+
2008.22e-064.01e-061.79e-37.43e-41.81e-071.94e-211.28e-20
1508.24e-064.04e-061.79e-37.57e-41.92e-079.48e-221.33e-20
3008.28e-062.04e-061.79e-33.86e-45.87e-071.75e-212.87e-20
+
+
2509.67e-065.87e-062.23e-31.09e-31.17e-062.80e-216.27e-20
1509.69e-065.23e-062.23e-39.89e-41.59e-064.52e-219.28e-20
3009.75e-062.28e-062.24e-34.41e-43.93e-064.98e-162.06e-15
+
+
3001.11e-056.38e-062.69e-31.19e-33.41e-066.76e-212.22e-19
1501.12e-055.84e-062.70e-31.12e-34.68e-063.30e-151.42e-14
3001.12e-052.39e-062.70e-34.77e-49.89e-061.45e-136.66e-13
+
+
3501.33e-056.77e-063.20e-31.27e-38.44e-064.70e-161.96e-15
1501.33e-055.84e-063.20e-31.13e-31.06e-056.85e-133.23e-12
3001.34e-052.51e-063.20e-35.27e-42.11e-051.85e-109.29e-10
+
+
4001.42e-057.06e-063.64e-31.36e-31.88e-057.99e-114.015e-10
1501.43e-056.14e-063.64e-32.13e-32.05e-053.56e-086.07e-08
3001.44e-052.82e-063.65e-35.09e-33.43e-051.82e-072.99e-07
+
+
4501.61e-057.40e-064.13e-35.18e-32.94e-051.45e-072.44e-07
1501.61e-056.31e-064.13e-31.01e-23.15e-053.59e-075.86e-07
3001.63e-053.23e-064.13e-31.54e-25.32e-055.99e-079.78e-07
+
+
5001.75e-057.82e-064.60e-31.21e-24.00e-054.18e-076.89e-07
1501.76e-057.00e-064.60e-32.30e-24.30e-058.78e-071.43e-06
3001.77e-053.42e-064.61e-32.14e-27.04e-058.26e-071.34e-06
+
+
6001.91e-059.00e-065.50e-33.84e-26.65e-051.48e-062.42e-06
1501.91e-057.28e-065.50e-34.23e-27.16e-051.63e-062.67e-06
3001.93e-051.91e-055.51e-30.121.44e-43.88e-068.37e-06
+
+
7002.09e-059.21e-066.43e-35.58e-29.70e-052.10e-063.46e-06
1502.10e-051.78e-056.43e-31.38e-11.25e-45.00e-069.55e-06
3002.11e-053.11e-056.43e-30.172.36e-44.48e-061.14e-05
+
+
8002.43e-051.49e-057.41e-30.141.51e-45.40e-069.55e-06
1502.44e-055.16e-057.41e-30.182.69e-34.52e-061.20e-05
3002.46e-053.51e-057.41e-30.114.29e-42.59e-066.99e-06

Typeset image

+ Note. + M + ini is the initial mass in M + . V + ini is the initial rotational velocity in kilometers per second. For the stable isotopes, the initial amount present in the star is also given. The yields tabulated here are not corrected for radioactive decay that might take place in the ISM during the evolution of the star. Yields for all 209 isotopes in the nuclear network are available on Zenodo doi: 10.5281/zenodo.5497258.

SLRs

For 26Al (Figure 4(a)), the nonrotating yields are comparable to those from Paper I, with the exceptions of the 10, 40, and 45 M + models. The reason is that the 10 M + model loses more mass in our earlier study due to a longer main-sequence lifetime, leading to a slightly higher yield. The 40 and 45 M + models are evolved until core collapse here, while earlier they did not finish helium burning. This leads to a larger mass loss and therefore a higher yield. The largest impact of the SNBs is at the lower mass end, 10–35 M + (as shown in Paper I). However, here we also find that, because both rotation and binary interaction lead to an increased mass loss at similar points in the evolution, the impact of the SNBs becomes relatively smaller with increasing initial rotational velocity. The effect of binary interactions becomes negligible for models with initial masses of 40–45 M + , depending on the initial rotational velocity. Overall, our 26Al yields are only mildly sensitive to rotation and the wind prescription, since we changed the latter from Hamann et al. (1995) to Nugis & Lamers (2000) for the WR phase. The effect of the binary interactions is stronger than the effect of rotation or changing the wind.

The left panels show our SLR yields for the single star models (solid lines with symbols) for the three different initial rotational velocities. In panel (a), 26Al, the red line shows the yields from Paper I. The dashed lines give the effective binary yields defined as SNB yields averaged on the period range given in Paper I assuming a flat period distribution. These effective binary yields are presented to help visualize the effect of binary interactions. The shaded area between the single star models and the effective binary yields therefore represents the results from the potential parameter space covered by binary systems. The right panels show the single star models of this study together with the wind yields of various other studies, as listed in the legend.

Figures 4(c) and (e) show the 36Cl and 41Ca wind yields for our models. Unlike for 26Al, where the yield increases gradually with increasing mass, these yields show a sharp rise of almost 15 orders of magnitude at masses between 20 and 30 M + , depending on initial rotational velocity. This is easily understood when considering Figure 5, which shows the Kippenhahn diagrams for nonrotating 30 and 50 M + models, with the 41Ca mass-fraction on the color scale. Prior to core helium burning, there is no 41Ca present within these stars. The abundance of 41Ca (and 36Cl) increases due to neutron captures during He burning on 40Ca (and 35Cl), and it is also destroyed by neutron-capture reactions (see, e.g., Lugaro et al. 2018, Figure 7). For the 30 M + model, this 41Ca (and 36Cl) barely reaches the surface, leading to a very low yield. However, for the 50 M + model the top layers of the helium burning core are stripped away, leading to a more significant 41Ca (36Cl) yield. For the rotating models, the WR phase is reached at a lower initial mass, and the increase in the yields also moves toward these lower initial masses. This means that these yields are highly sensitive to the wind prescription used, especially for the WR phase.

Kippenhahn diagrams for a 30 M + star in the left panel and for a 50 M + the right panel, both nonrotating. The horizontal axis shows the time left until core collapse. The color scale shows the 41Ca mass fraction. The green-hatched areas represent convective regions, the blue hatched areas, overshoot, and the red areas semi-convection. The red dotted line is the size of the hydrogen-depleted core.

Stable Isotopes

Unlike the SLRs, the stable isotopes 19F and 22Ne are already present in the star at the time of its birth. Both these isotopes are typically destroyed by proton captures during hydrostatic H burning as part of the CNO and NeNa cycles through the 19F(p,α)16O and 22Ne(p,γ)23Na reaction. During He burning, 19F is produced by α captures on 15N, and also depleted by α captures, producing 22Ne (Meynet & Arnould 2000). 22Ne is produced in the helium burning, mainly by double α captures on 14N, while it is not significantly destroyed. To expel a significant amount 19F into the interstellar medium, the He-core needs to be exposed in an early stage of helium burning, before 19F is destroyed.

For the majority of the models shown in Figure 6, the initial abundance (red lines) of the stable isotopes are higher than the amount expelled from the stars, and therefore the net yield is negative. Only the heaviest, rotating models in our set (≥60 M + ) produce a positive net yield. This is in agreement with the earlier results for 19F by Meynet & Arnould (2000) and Palacios et al. (2005).

The left panels show our 19F (top) and 22Ne (bottom) yields and the initial abundances. The red line indicates the initial abundance of the models. The right panels show the stellar models of this study together with the yields of various other studies.

For 22Ne the stars have positive yields for masses 40–45 M + and above, depending on initial rotational velocity. This is because, unlike 19F, 22Ne is not completely destroyed during hydrogen burning and during helium burning, 22Ne is not completely destroyed while 19F does. Therefore, it is easier to obtain a positive yield. These yields are not only sensitive to the wind prescription, which determines how much material is ejected, but also to the internal mixing processes due to rotation, which leads to more or less destruction of the initial abundance.

Comparison to Other Data Sets

The right panels of Figures 4 and 6 show the results of our models along with several other studies from the literature. On top of showing the results of LC18 and E12, we also consider the nonrotating models from Sukhbold et al. (2016), computed with the KEPLER stellar evolution code, Pignatari et al. (2016), computed with GENEC for the for mass range of interest, and from Ritter et al. (2018), computed with MESA version 3709. We note that E12 and Pignatari et al. (2016) both use the GENEC code; however, the models of Pignatari et al. (2016) cover all burning stages. Therefore, all isotopes we are interested in are included, while for for E12 we do not have yields for 36Cl, 41Ca, and 60Fe. Overall, the yield sets are in broad agreement within the uncertainties of the stellar evolution modeling. The models that stand out the most are the low-mass (10–30 M + ) LC18 models. These models show an increase in the SLR yields from nonrotating to rotating orders of magnitude higher than found by the other models. For 26Al, the LC18 increase is comparable to the increase in the 26Al yields we found in Paper I between single stars and binary models. This behavior in the LC18 models is due to a very strong increase in the mass loss compared to their nonrotating models, leading to an increased yield. This difference in mass loss is due to the treatment of rotational mixing and the formation of a dust driven wind, as explained in Chieffi & Limongi (2013).

For the stable isotopes, also the highest mass models by Sukhbold et al. (2016) stand out. These models lose much more mass than our 60–80 M + stars, especially their 80 M + model loses nearly 74 M + , compared to ≃56 M + for our nonrotating model. The 20 and 25 M + + E12 models have higher yields than the overall trend for these two masses, because these stars have a slight boost to their winds, independent of rotation.

Early Solar System (ESS)

The radioactive isotopes we have studied in the previous section were inferred to be present in the ESS from observed excesses of their daughter nuclei in meteoritic inclusions. In this section, we consider a simple dilution model for 26Al, 36Cl, and 41Ca, to investigate if their abundances in the ESS can be explained self-consistently with the models presented here. While other stellar objects in the galaxy can produce these isotopes, such as novae and asymptotic giant branch stars, much research has focused on massive stars as ESS polluters, because these stars live short enough to be able to eject material within star-forming regions, which have typical lifetimes of at most a few tens of million of years (Murray 2011). Furthermore, massive star winds are preferred by several authors (Gaidos et al. 2009; Gounelle & Meynet 2012; Young 2014; Dwarkadas et al. 2017) as a most favored site of origin for 26Al because there are several difficulties for CCSNe to produce the abundances of SLRs in the proportion required to match the ESS values (see discussion in Lugaro et al. 2018). For example, they produce too high abundances of 60Fe and 53Mn. Both these isotopes have half-lives 4–50 times higher than the SLRs that we consider in the calculation here; therefore, their abundances in the ESS can be explained by decaying their abundances in the interstellar medium as derived by galactic chemical evolution (see, e.g., Wasserburg et al. 2006; Tang & Dauphas 2012; Trappitsch et al. 2018; Côté et al.2019a, 2019b).

The Dilution Method

The comparison to the ESS values is performed in four steps:

Step 1 is to determine a dilution factor, f for each stellar model. This is defined as + + + + f=MSLRESSMSLR* + + , where + + + + MSLRESS + + is the mass of a given SLR in the ESS, and + + + + MSLR* + + is the mass of the same SLR ejected by the stellar wind, i.e., the total yield. We use 26Al tp deter,one f and then apply the same value to 36Cl and 41Ca, + 10 + +

If the injection of the SLRs occurred in the form of dust grains, chemistry, and dust formation could lead to different f values for the different isotopes because Al, Ca, and Cl are different elements. While Al and Ca should behave chemically in a very similar way, the situation for Cl may be different. We do not consider these uncertainties here.

this is because the 26Al/27Al ratio in the ESS is very well established to 5.23 × 10−5, as reported by Jacobsen et al. (2008) and recently confirmed by Luu et al. (2019). We derive an initial amount of 26Al of 3.1 × 10−9 + M + assuming the solar abundance of 27Al (Lodders 2003) and a total mass of 1 M + to be polluted (see details in Lugaro et al. 2018).

Step 2 is to determine the delay time (Δt), which is the time interval between wind ejection and the formation of the first solids (the CAIs) in the ESS, for which time the SLR values are given. After we have applied our determined f to the yields of 41Ca, to obtain the diluted amount of this isotope in Step 1, we decay the 41Ca until we reach the observed ESS 41Ca/40Ca ratio of 4.6 × 10−9. The time needed, is the delay time.

Step 3 is to calculate a new abundance of 26Al by reverse decaying the initial ESS amount of 26Al using the delay time from Step 2. With this we recalculate f and use it to repeat Step 2. We continue this iteration until we converge to a Δt value within a 10% difference from the previous value.

Step 4 is to apply the final f to calculate the diluted 36Cl abundance. We then repeat Step 2 for 36Cl also to determine a delay time for 36Cl (ΔtCl) using the ESS 36Cl/35Cl ratio of 2.44 × 10−5 measured in the Curious Marie CAI (Tang et al.2017).

A few remarks need to be made about this method. First, even though 26Al is not produced in the same evolutionary phase as 36Cl and 41Ca, the bulk of these isotopes are expelled into the interstellar medium at the same time. Therefore, we do not need to take into account, for example, that some 26Al might have decayed before 36Cl and 41Ca were ejected the star. Second, we use the 41Ca/40Ca ratio to obtain Δt even though this ratio is not well constrained in the ESS (Liu 2017) because 41Ca is the shortest lived of the three isotopes considered here. Therefore, it is the most sensitive chronometer to short timescales (see also Wasserburg et al. 2006). Moreover, the abundances of both 36Cl and 41Ca can have a contribution from irradiation by solar cosmic rays in the disk. Higher values of 36Cl than the ESS value used here have been measured in other meteoritic inclusions and can be produced by irradiation within the ESS. The value measured in Curious Marie probably represents the primordial value derived from a stellar source because 36Cl coexists in this CAI with the canonical value of 26Al (Tang et al. 2017). We note also that the measurements of the ESS values of 41Ca and 36Cl might be affected by systematic uncertainties, because the abundance of 41Ca is very low and the abundance of 36Cl is based on the measurement of its roughly 2% decay channel into 38S. For 41Ca the latest data on a handful of CAIs (Liu 2017) demonstrate the presence of this very short-lived isotope in the ESS, however, the data precision is not high enough to be able to resolve possible heterogeneities.

Results and Comparison to Other Studies

We apply the method described in Section 5.1 to our models and they are considered to be a solution for the ESS when the delay times for 41Ca and 36Cl are comparable with a factor of up to 5. For our nonrotating models, a solution can be found for 26Al and 41Ca in the mass range 45–80 M + and Δt between 0.7 and 1 Myr. In order to also match the 36Cl abundance, the mass range needs to be restricted to stars with an initial mass of 60 M + and higher. There still is a small inconsistency because Δt needs to be lower for 36Cl than for 41Ca, as the delay time for 36Cl is between 0.2 and 0.5 Myr. The results for our rotating models are similar, except that the mass range for which a solution is possible for 26Al and 41Ca may extend down to 40 M + . If we consider the three isotopes, it is possible to find a solution for initial rotational velocity of 150 and 300 km s−1 at masses 50–80 M + and 60 and 70 M + , respectively.

In Figure 7 we look more closely at a selected set of models. It shows the abundance ratios (R/S) for the three SLRs (R) over their stable reference isotope (S) versus delay time for the dilution factor f, for our stellar models with a mass of 40, 60, and 80 M + . The horizontal bars represent the ESS ratios and their uncertainties. We compare our results with the results calculated from the LC18 models for the same initial masses.

Abundance ratios (R/S) for the three SLRs (R) over their stable reference isotope (S) for a certain dilution factor f. The solid lines represent the nonrotating models, the dashed lines the models with an initial rotational velocity of 150 km s−1, and the dotted lines the models with an initial rotational velocity of 300 km s−1. The horizontal bands represent the ESS ratios, with their respective errors. The vertical lines represent the delay time for the Ca ratio. The left panels give the results for our models (40, 60, and 80 M + ), the right panels give the results for the models by LC18 for the same masses. The range of values of f for each panel (in units of 10−4) are: (a) 1.32–2.64, (b) 2.44–3.03, (c) 0.60–1.13, d 0.54–1.37, (e) 0.16–0.5, and (f) 0.08–0.24.

For the 40 M + models (Figure 7(a)), the 36Cl and 41Ca yields from the nonrotating model (solid lines) are too low to match their ESS ratios. Only our rotating models (dashed and dotted lines in panel a) can match both the Al and Ca ratios (at 105.9 yr), while the the Cl ratio is between one and two orders of magnitude too low. This excludes this star as a potential solution for the ESS. For the LC18 models (Figure 7(b)), the nonrotating model does not match Cl or the Ca ratio either. As for our models, the rotating models match both the Al and Ca ratios. The difference is that in the LC18 models the Cl ratio is matched very early on in the calculation, at 104.9 yr, while the other ratios are matched after 1 Myr, while in our models the Cl ratio cannot be matched at all. However, due to this large difference in Δt, these models can still not be considered a potential solution.

For the 60 M + models (Figure 7(c)), all of our models can match the three isotopic ratios, the Cl ratio at 105.5 yr and the other two ratios at 106 yr. For the LC18 models (Figure 7(d)), only their model with an initial rotational velocity of 150 km s−1 matches the Cl ratio, but too early (104–4.6 yr) to be considered a solution together with the Al and Ca ratios.

Finally, for the 80 M + (Figure 7(e)), we can match the ESS ratios of the SLRs with our nonrotating model and the model rotating at an initial velocity of 150 km s−1. There is still a difference in the delay times for 41Ca and 36Cl of a factor of 2. For the 80 M + + LC18 models (Figure 7(f)), only the nonrotating model matches all three ratios, and the Cl ratio is matched at 0.03 Myr, while the other two are matched at 1.14 Myr. This difference is again too large to consider this as a solution. The rotating models cannot match the Cl ratio.

The difference between the sets can be explained by considering Figures 4(d) and (f). While the 41Ca yields are very comparable between the two sets of both nonrotating and rotating models for 60 and 80 M + , the nonrotating and rotating 36Cl yields are lower for the LC18 models due to the differences in mass loss (see Section 4.1) compared to our yields. Therefore, there is less 36Cl compared to 41Ca in the LC18 models than in our models, making it harder to match both ratios within the uncertainties. For the 40 M + models, the rotating yields given by LC18 are higher than our rotating yields for 36Cl, and 41Ca which explains why their rotating models can match for the Cl ratio, while our models cannot.

Our results that the three radionuclides 26Al, 36Cl, and 41Ca can be ejected by the winds of a variety of WR stars at relative levels compatible with the meteoritic observations are also in qualitative agreement with the results of Arnould et al. (1997, 2006). Because these authors used 107Pd to calculate f, our results are not directly comparable. However, if we consider the delay times shown in Figures 5–7 of Arnould et al. (2006), we find similar values for the delay time for the Ca ratio, between 105.5 and 106 yr. Their delay time for the Cl ratio for their 40 M + model is much closer to their delay time for the Ca ratio compared to our models and those by LC18. However, the delay times for the Cl ratio are worse for their 60 and 85 M + models than for our models or those by LC18. Our result also confirm the analysis of the production of 26Al in WR stars of mass between 32 and 120 M + by Gounelle & Meynet (2012). Our f factor may be compared to their η + wind/1000 in their Equation (2), for which they find values ranging down to 2 × 10−5. For our models it is possible to find a solution for 26Al and 41Ca for models with initial masses 60–80 M + with dilution factors in the range 0.00011–7.2 × 10−5 and Δt around 1 Myr.

Overall, we conform that WR stars are a robust candidate site for the production of 26Al, 36Cl, and 41Ca in the ESS.

The Impact of Neutron-capture Rates

From Figure 7, it becomes clear that to match the Al, Ca, and Cl ratios using a self-consistent delay time within the scenario and the ESS ratios discussed in this work, more 36Cl and/or less 41Ca is required. To look more closely at this, we performed a sensitivity study for the destruction of these two isotopes. The dominant rate in the 36Cl and 41Ca destruction via neutron captures are the 36Cl(n,p)36S and 41Ca(n,α)38Ar rates, respectively. For the rate 36Cl(n,p)36S we use the reaclib label “ths8” which corresponds to a theoretical determination by Rauscher (2008). For 36Cl(n,p)36S reported experimental rates are both similar to the value used here (de Smet et al. 2007) and 30% lower, at the temperature of interest here around 200–300 MK. For the 41Ca(n,α)38Ar rate the JINA reaclib reference is Sevior et al. (1986), which is roughly a factor of 2 higher than the theoretical rate by Rauscher (2008). Given that there are significant differences between the current estimates, we computed three additional 60 M + nonrotating models for which we multiplied the neutron-capture reaction rates of interest by different constants as indicated in Table 3.

Factors Used to Multiply the Indicated Reaction Rates from Their Standard Values in the 60 M + Nonrotating Models Considered in this Section and the Yields in M + Resulting from These Changes

+ 36Cl(n,p)36S + 41Ca(n,α)38Ar + 36Cl (M + ) + 41Ca (M + )
Model 1111.48e-062.42e-06
Model 20.512.47e-062.55e-06
Model 3121.51e-061.29e-06
Model 40.522.41e-061.29e-06

Typeset image

The table also gives the yields for 36Cl and 41Ca. The 36Cl yield increases when the reaction rate is decreased, as was expected (models 2 and 4). For model 2, the 41Ca yield increases slightly. For models 3 and 4 the 41Ca yield decreases by about a factor 2, as is expected as well. The changes in the yields are not fully linear due to other (neutron-capture) reactions also playing a minor role in the destruction of the these two isotopes. If we apply the delay time calculation to these new models, we find that for model 1, the difference in the delay time between the Ca ratio and the Cl ratio is a factor of ∼3. For model 2, the delay time difference is similar to that of model 1. This is visible in Figure 8, where the solid lines (model 1) and the dashed lines (model 2) are more or less overlapping. Models 3 (dotted lines) and 4 (dashed-dotted lines), provide a better solution as the difference in the delay time is reduced to a factor 1.8. There is little difference between these two models. From this, we can conclude that to obtain a better match for all three SLR ratios, a decrease in the amount of 41Ca has more impact than the increase in the amount of 36Cl.

Results for the reaction rate tests. The colors and bands are the same as in Figure 7.

Oxygen Isotopic Ratios

For sake of completeness, we also checked if the models that reproduce 26Al and 41Ca affect the O isotopic ratios. This is because a successful pollution model should avoid predicting a correlation between the presence of 26Al and modification of the O isotopes (Gounelle & Meibom 2007) to match the observational evidence that some CAIs (the fractionated and unknown nuclear anomalies class) and some corundum grains are poor in 26Al, but they have virtually the same O isotopic composition as those that are rich in 26Al (see, e.g., Makide et al. 2011). The composition of the O isotopes in the winds is dominated by H and He burning and its main features are production of 16O and depletion of 17O and 18O, relative to their initial amounts in the star, with 17O/16O and 18O/16O ratios at most roughly 8 and 20 times higher than solar. Therefore, when we add the O isotopic wind yields of the selected models diluted by f to the O solar system abundances, we obtained a decrease of the order of 0.1–1.5% in both the 17O/16O and 18O/16O ratios, increasing the absolute value with increasing the stellar mass from 40–50 M + to 80 M + . While variations at the lower values of this range would not be detectable, those at the upper values would be. Therefore, if we assume the specific scenario where the 26Al-poor and 26Al-rich grains formed before and after injection, respectively, then the lower masses would be favored to avoid changes in the O ratios. However, the higher masses reproduce the 36Cl abundance. This discrepancy needs to be further investigated.

Conclusion

We have investigated the production of selected stable and radioactive isotopes in the winds of massive rotating stars. The selected SLRs of interest for the ESS are 26Al, 36Cl, and 41Ca, while the selected stable isotopes are 19F and 22Ne. These results have been compared to various studies in the literature. We also determined which of these models could self-consistently explain the ESS abundances of 26Al, 36Cl, and 41Ca. We have found that:

For the SLRs, it is mostly the WRs in the mass range 40–80 M + that give significant yields. However, the 60Fe yields are insignificant compare to the supernova yields.

Only our most massive rotating stars produce a net positive 19F yield (≥60 M + for an initial rotation rate of 300 km s−1). For 22Ne, more stars give a net positive yield, from ≥ 40–45 M + , depending on the initial rotational velocity.

The main effect of rotation is that it lowers the initial mass for which the stars become WRs. For 26Al the effect of rotation on the yields is minimal, and only noticeable around the WR limit. For 36Cl and 41Ca a higher rotation rate leads to an increase in the yields at lower masses, shifting from ∼30 to ∼20 M + . From ∼45 M + the yields become again comparable for all models. For the stable isotopes, the rotational mixing leads to lower yields below 50 and 35 M + for 19F and 22Ne, respectively.

Overall, the yields from our models compare well to those from the literature. There are some differences caused by a different prescription of the mass-loss and/or a different approach to rotational mixing. This clearly shows that the treatment of stellar winds and the increase of mass loss due to rotation, as well as the treatment of rotation and rotational mixing, have still a large impact on the yields.

In Section 5, we have investigated which of the stellar models described in this paper could explain the ESS abundances. Depending on the initial rotational velocity, stars with an initial mass of 40–45 M + and higher could explain the 26Al and 41Ca abundances. However, only the most massive models (≥60 M + ) can also explain the 36Cl abundances. We remind that also the following CCSNe of massive star models will expel a significant amount of these isotopes, however, they produce an overabundance of 60Fe relatively to its ESS value.

From our tests of the neutron-capture rates of 36Cl and 41Ca we conclude that to obtain a better match for all three SLR ratios, a decrease in the amount of 41Ca, derived from increasing its (n,α) rate, has more impact than the increase in the amount of 36Cl, derived from decreasing its (n,p) rate.

When comparing our models with the oxygen-ratios in the Solar System, which are known to high precision, however, we find that the high mass models decrease the oxygen isotopic ratios, 17O/16O and 18O/16O, too much, while the lower mass models stay within the error-margins of the measurements.

For all isotopes discussed here, except for 26Al which we presented in Paper I, the influence of binary interactions still needs to be investigated. We will examine this in our upcoming paper, where we will also calculate whether these binary yields could match the ESS abundances. Future work includes the formation of dust from the WR binary stars (see, e.g., Lau et al. 2020), since dust may be needed to incorporate SLRs into the ESS (Dwarkadas et al. 2017). Furthermore, a more detailed analysis of several uncertainties should be performed, which includes different prescriptions for the winds and for the rotational boost on wind loss, as well as investigations of the effect of reaction rate uncertainties specifically on the destruction of 19F, 41Ca, and 36Cl, and the neutron source 22Ne(α,n)25Mg reaction (Adsley et al. 2021). Finally, to present a complete view of the isotopes discussed here, the explosive nucleosynthetic yields will need to be calculated using our models as the progenitors of the explosion.

H.E.B. thanks the MESA team for making their code publicly available, Frank Timmes for his support with the pre-supernova models, and Bill Paxton for other clarifications of the code. We thank Zsolt Keszthelyi for his help with implementing the rotational boost into MESA. We thank Alessandro Chieffi and Marco Limongi for clarifications of their results in their 2018 paper. We also thank Alan Boss for discussion on the ESS, and Andrés Yague for his assistance with Python. We also thank the referee for all their comments and help with improving this paper. This work is supported by the ERC via CoG-2016 RADIOSTAR [11] (grant Agreement 724560). We also acknowledge support from “ChETEC” COST Action(CA16117), supported by COST (European Cooperation in Science and Technology). MP acknowledges significant support to NuGrid from STFC (through the University of Hull’s Consolidated grant ST/R000840/1), from the National Science Foundation (NSF, USA) under grant No. PHY-1430152 (JINA Center for the Evolution of the Elements) and from the “Lendulet-2014” Program of the Hungarian Academy of Sciences (Hungary). MP thanks the support from the US IReNA Accelnet network.

+ Software: MESA (Paxton et al. 2011, 2013, 2015, 2018).

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W. den" + }, + "affiliation": [ + { + "affPubRaw": "Konkoly Observatory, Research Centre for Astronomy and Earth Sciences (CSFK), E\u00f6tv\u00f6s Lor\u00e1nd Research Network (ELKH), Konkoly Thege Mikl\u00f3s \u00fat 15-17, H-1121 Budapest, Hungary", + "affPubID": "affiliation01" + } + ] + }, + { + "name": { + "surname": "Doherty", + "given_name": "C. L." + }, + "affiliation": [ + { + "affPubRaw": "Konkoly Observatory, Research Centre for Astronomy and Earth Sciences (CSFK), E\u00f6tv\u00f6s Lor\u00e1nd Research Network (ELKH), Konkoly Thege Mikl\u00f3s \u00fat 15-17, H-1121 Budapest, Hungary", + "affPubID": "affiliation01" + }, + { + "affPubRaw": "School of Physics and Astronomy, Monash University, VIC 3800, Australia", + "affPubID": "affiliation03" + } + ] + }, + { + "name": { + "surname": "Pignatari", + "given_name": "M." + }, + "affiliation": [ + { + "affPubRaw": "Konkoly Observatory, Research Centre for Astronomy and Earth Sciences (CSFK), E\u00f6tv\u00f6s Lor\u00e1nd Research Network (ELKH), Konkoly Thege Mikl\u00f3s \u00fat 15-17, H-1121 Budapest, Hungary", + "affPubID": "affiliation01" + }, + { + "affPubRaw": "E.A. Milne Centre for Astrophysics, Department of Physics and Mathematics, University of Hull, HU6 7RX, UK", + "affPubID": "affiliation04" + }, + { + "affPubRaw": "NuGrid Collaboration, http://nugridstars.org", + "affPubID": "affiliation05" + }, + { + "affPubRaw": "Joint Institute for Nuclear Astrophysics, Center for the Evolution of the Elements, Michigan State University, 640 South Shaw Lane, East Lansing, MI 48824, USA", + "affPubID": "affiliation06" + } + ], + "attrib": { + "orcid": "0000-0002-9048-6010" + } + }, + { + "name": { + "surname": "Lugaro", + "given_name": "M." + }, + "affiliation": [ + { + "affPubRaw": "Konkoly Observatory, Research Centre for Astronomy and Earth Sciences (CSFK), E\u00f6tv\u00f6s Lor\u00e1nd Research Network (ELKH), Konkoly Thege Mikl\u00f3s \u00fat 15-17, H-1121 Budapest, Hungary", + "affPubID": "affiliation01" + }, + { + "affPubRaw": "School of Physics and Astronomy, Monash University, VIC 3800, Australia", + "affPubID": "affiliation03" + }, + { + "affPubRaw": "ELTE E\u00f6tv\u00f6s Lor\u00e1nd University, Institute of Physics, Budapest 1117, P\u00e1zm\u00e1ny P\u00e9ter s\u00e9t\u00e1ny 1/A, Hungary", + "affPubID": "affiliation07" + } + ], + "attrib": { + "orcid": "0000-0002-6972-3958" + } + } + ], + "title": { + "textEnglish": "26Aluminum from Massive Binary Stars. II. Rotating Single Stars Up to Core Collapse and Their Impact on the Early Solar System" + }, + "abstract": { + "textEnglish": "Radioactive nuclei were present in the early solar system (ESS), as inferred from analysis of meteorites. Many are produced in massive stars, either during their lives or their final explosions. In the first paper of this series (Brinkman et al. 2019), we focused on the production of 26Al in massive binaries. Here, we focus on the production of another two short-lived radioactive nuclei, 36Cl and 41Ca, and the comparison to the ESS data. We used the MESA stellar evolution code with an extended nuclear network and computed massive (10\u201380 M \u2299), rotating (with initial velocities of 150 and 300 km s\u22121) and nonrotating single stars at solar metallicity (Z = 0.014) up to the onset of core collapse. We present the wind yields for the radioactive isotopes 26Al, 36Cl, and 41Ca, and the stable isotopes 19F and 22Ne. In relation to the stable isotopes, we find that only the most massive models, \u226560 and \u226540 M \u2299 give positive 19F and 22Ne yields, respectively, depending on the initial rotation rate. In relation to the radioactive isotopes, we find that the ESS abundances of 26Al and 41Ca can be matched with by models with initial masses \u226540 M \u2299, while 36Cl is matched only by our most massive models, \u226560 M \u2299. 60Fe is not significantly produced by any wind model, as required by the observations. Therefore, massive star winds are a favored candidate for the origin of the very short-lived 26Al, 36Cl, and 41Ca in the ESS." + }, + "references": [ + " AbiaC. CristalloS. CunhaK. de LavernyP. SmithV. V. 2019A&A625A402019A&A...625A..40A10.1051/0004-6361/201935286", + " AdamsF. C. 2010ARA&A48472010ARA&A..48...47A10.1146/annurev-astro-081309-130830", + " AdsleyP. BattinoU. BestA. 2021PhRvC1030158052021PhRvC.103a5805A10.1103/PhysRevC.103.015805", + " AertsC. MathisS. RogersT. 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All rights reserved." + } +} diff --git a/tests/test_jats.py b/tests/test_jats.py index 968f190..aa808a6 100644 --- a/tests/test_jats.py +++ b/tests/test_jats.py @@ -39,6 +39,7 @@ def test_jats(self): "jats_iop_no_contribs", "jats_iop_no_orcid_tag", "jats_iop_preprint_in_record", + "jats_iop_apj_923_1_47", ] for f in filenames: test_infile = os.path.join(self.inputdir, f + ".xml") @@ -53,6 +54,9 @@ def test_jats(self): output_data = json.loads(output_text) parsed = parser.parse(input_data) + #wuw = test_outfile+".wuw" + #with open(wuw,"w") as fw: + # fw.write(json.dumps(parsed, indent=2)) # make sure this is valid schema try: From 08af69ba45cadc8112d354c5768f4017a407696a Mon Sep 17 00:00:00 2001 From: Matthew Templeton Date: Mon, 10 Jul 2023 11:12:39 -0400 Subject: [PATCH 2/3] fix: fixes issue 51 modified: tests/stubdata/input/jats_iop_apj_923_1_47.xml modified: tests/test_jats.py --- tests/stubdata/input/jats_iop_apj_923_1_47.xml | 12 ++++++------ tests/test_jats.py | 3 --- 2 files changed, 6 insertions(+), 9 deletions(-) diff --git a/tests/stubdata/input/jats_iop_apj_923_1_47.xml b/tests/stubdata/input/jats_iop_apj_923_1_47.xml index f56b367..d959f5f 100644 --- a/tests/stubdata/input/jats_iop_apj_923_1_47.xml +++ b/tests/stubdata/input/jats_iop_apj_923_1_47.xml @@ -160,7 +160,7 @@ ELTE Eötvös Loránd University, Institute of Physics, Budapest 1117, Pázmány 26.2543.650.461503.5330.8243.310.3216.8920.083.893.8819.9949.920.323003.6728.8033.480.3611.1013.684.072.7413.6056.300.29
8003.2434.9850.720.3120.6824.103.584.8423.9955.900.361503.3630.3333.280.3610.6713.243.762.4513.1766.720.253003.5421.9925.200.399.1011.543.972.0611.4668.420.16

Typeset image

- Notes. + Notes. M ini is the initial mass in M . V @@ -224,7 +224,7 @@ ELTE Eötvös Loránd University, Institute of Physics, Budapest 1117, Pázmány c,O (reported in Column 10) is very sensitive to mixing in the final phases of the stellar evolution and a small fluctuation in the mixing can easily alter this value.

The mass loss during the main sequence always increases with higher rotational velocities (solid lines in Figure 3). The same applies for the total lifetime of the star, t tot (Column 9 of Table 1). On the other hand, the total mass loss during the whole evolution, ΔM, (see Table 1) is not always larger for the higher rotation rates.

The last column of Table 1 gives the compactness parameter, ξ 2.5. This parameter, as defined by O’Connor & Ott (2011) in their Equation (10), determines how compact the core of the star is just before the collapse and therefore how difficult it is to explode the star. The compactness is sensitive to small changes in the structure, and is therefore strongly dependent on the model parameters and the codes used (see e.g., Sukhbold et al. 2016; Limongi & Chieffi 2018 and Schneider et al. 2021).

Comparison to Other Data Sets

We compare our results primarily to those of Ekström et al. (2012, hereafter E12) calculated using the GENEC stellar evolution code, and Limongi & Chieffi (2018, hereafter LC18) calculated with the FRANEC stellar evolution code, for three reasons. The first is that both studies present rotating and nonrotating massive star models until the late phases of evolution. The second is that the implementation of rotation differs in these codes compared to what is used in MESA. Specifically, the treatment of rotation in MESA is based on a diffusive approximation, while in GENEC and FRANEC it is based on diffusion advection approach (Maeder & Zahn 1998; Paxton et al. 2013), with it well established that the impact of rotation on stellar model computations varies depending on which rotational mixing approach is used (see, e.g., Maeder & Meynet 2000b). Finally, all the stellar evolution details from these two studies are publicly available, though for E12 we do not have yields for 36Cl, 41Ca, and 60Fe. We compare our models to those from the literature at solar metallicity (taken to be either Z = 0.014 or 0.02, depending on the source).

The E12 models have an initial rotational velocity of 0.4ω - crit (corresponding to ∼260–350 km s−1). The LC18 models have the same initial rotational velocities of 150 and 300 km s−1, as our models.

Our models show similar trends as in those works, such as the extended duration of the main sequence and the increased mass loss in the early phases of the evolution. Overall, all the different models show similar main-sequence lifetimes. However, the choice of mass-loss prescription makes a big difference between the sets. The LC18 models lose much more mass in the early phases when rotation is included. When looking at their Figure 7, their lowest mass models including rotation move up almost vertically in the Hertzsprung–Russell diagram at the end of the main sequence. This leads to a strong increase in the mass loss, which is not seen in our models nor in those by E12.

Stellar Yields: Results and Discussion

In this section we present and discuss the wind yields for 26Al, 19F, 22Ne, 36Cl, and 41Ca from our models and compare them to other studies in the literature. We do not present the 60Fe yields in quantitative detail because our models confirm all the previous results that this isotope is not ejected in the winds (the maximum yield we found is 4.55 × 10−10 + crit (corresponding to ∼260–350 km s−1). The LC18 models have the same initial rotational velocities of 150 and 300 km s−1, as our models.

Our models show similar trends as in those works, such as the extended duration of the main sequence and the increased mass loss in the early phases of the evolution. Overall, all the different models show similar main-sequence lifetimes. However, the choice of mass-loss prescription makes a big difference between the sets. The LC18 models lose much more mass in the early phases when rotation is included. When looking at their Figure 7, their lowest mass models including rotation move up almost vertically in the Hertzsprung–Russell diagram at the end of the main sequence. This leads to a strong increase in the mass loss, which is not seen in our models nor in those by E12.

Stellar Yields: Results and Discussion

In this section we present and discuss the wind yields for 26Al, 19F, 22Ne, 36Cl, and 41Ca from our models and compare them to other studies in the literature. We do not present the 60Fe yields in quantitative detail because our models confirm all the previous results that this isotope is not ejected in the winds (the maximum yield we found is 4.55 × 10−10 M for the nonrotating 70 M model). In Table 2, the yields of the five isotopes and the initial abundances of 19F and 22Ne are presented. The complete set of wind yields for all isotopes and models presented here, are available on Zenodo under a Creative Commons 4.0 license: doi: 10.5281/zenodo.5497258. As discussed in Section 3, for the low-mass end, 10–35 M @@ -277,7 +277,7 @@ ELTE Eötvös Loránd University, Institute of Physics, Budapest 1117, Pázmány 7002.09e-059.21e-066.43e-35.58e-29.70e-052.10e-063.46e-061502.10e-051.78e-056.43e-31.38e-11.25e-45.00e-069.55e-063002.11e-053.11e-056.43e-30.172.36e-44.48e-061.14e-05


8002.43e-051.49e-057.41e-30.141.51e-45.40e-069.55e-061502.44e-055.16e-057.41e-30.182.69e-34.52e-061.20e-053002.46e-053.51e-057.41e-30.114.29e-42.59e-066.99e-06

Typeset image

- Note. + Note. M ini is the initial mass in M . V @@ -300,7 +300,7 @@ ELTE Eötvös Loránd University, Institute of Physics, Budapest 1117, Pázmány model loses nearly 74 M , compared to ≃56 M for our nonrotating model. The 20 and 25 M - + E12 models have higher yields than the overall trend for these two masses, because these stars have a slight boost to their winds, independent of rotation.

Early Solar System (ESS)

The radioactive isotopes we have studied in the previous section were inferred to be present in the ESS from observed excesses of their daughter nuclei in meteoritic inclusions. In this section, we consider a simple dilution model for 26Al, 36Cl, and 41Ca, to investigate if their abundances in the ESS can be explained self-consistently with the models presented here. While other stellar objects in the galaxy can produce these isotopes, such as novae and asymptotic giant branch stars, much research has focused on massive stars as ESS polluters, because these stars live short enough to be able to eject material within star-forming regions, which have typical lifetimes of at most a few tens of million of years (Murray 2011). Furthermore, massive star winds are preferred by several authors (Gaidos et al. 2009; Gounelle & Meynet 2012; Young 2014; Dwarkadas et al. 2017) as a most favored site of origin for 26Al because there are several difficulties for CCSNe to produce the abundances of SLRs in the proportion required to match the ESS values (see discussion in Lugaro et al. 2018). For example, they produce too high abundances of 60Fe and 53Mn. Both these isotopes have half-lives 4–50 times higher than the SLRs that we consider in the calculation here; therefore, their abundances in the ESS can be explained by decaying their abundances in the interstellar medium as derived by galactic chemical evolution (see, e.g., Wasserburg et al. 2006; Tang & Dauphas 2012; Trappitsch et al. 2018; Côté et al.2019a, 2019b).

The Dilution Method

The comparison to the ESS values is performed in four steps:

Step 1 is to determine a dilution factor, f for each stellar model. This is defined as @@ -338,7 +338,7 @@ ELTE Eötvös Loránd University, Institute of Physics, Budapest 1117, Pázmány models (Figure 7(a)), the 36Cl and 41Ca yields from the nonrotating model (solid lines) are too low to match their ESS ratios. Only our rotating models (dashed and dotted lines in panel a) can match both the Al and Ca ratios (at 105.9 yr), while the the Cl ratio is between one and two orders of magnitude too low. This excludes this star as a potential solution for the ESS. For the LC18 models (Figure 7(b)), the nonrotating model does not match Cl or the Ca ratio either. As for our models, the rotating models match both the Al and Ca ratios. The difference is that in the LC18 models the Cl ratio is matched very early on in the calculation, at 104.9 yr, while the other ratios are matched after 1 Myr, while in our models the Cl ratio cannot be matched at all. However, due to this large difference in Δt, these models can still not be considered a potential solution.

For the 60 M models (Figure 7(c)), all of our models can match the three isotopic ratios, the Cl ratio at 105.5 yr and the other two ratios at 106 yr. For the LC18 models (Figure 7(d)), only their model with an initial rotational velocity of 150 km s−1 matches the Cl ratio, but too early (104–4.6 yr) to be considered a solution together with the Al and Ca ratios.

Finally, for the 80 M (Figure 7(e)), we can match the ESS ratios of the SLRs with our nonrotating model and the model rotating at an initial velocity of 150 km s−1. There is still a difference in the delay times for 41Ca and 36Cl of a factor of 2. For the 80 M - + LC18 models (Figure 7(f)), only the nonrotating model matches all three ratios, and the Cl ratio is matched at 0.03 Myr, while the other two are matched at 1.14 Myr. This difference is again too large to consider this as a solution. The rotating models cannot match the Cl ratio.

The difference between the sets can be explained by considering Figures 4(d) and (f). While the 41Ca yields are very comparable between the two sets of both nonrotating and rotating models for 60 and 80 M , the nonrotating and rotating 36Cl yields are lower for the LC18 models due to the differences in mass loss (see Section 4.1) compared to our yields. Therefore, there is less 36Cl compared to 41Ca in the LC18 models than in our models, making it harder to match both ratios within the uncertainties. For the 40 M models, the rotating yields given by LC18 are higher than our rotating yields for 36Cl, and 41Ca which explains why their rotating models can match for the Cl ratio, while our models cannot.

Our results that the three radionuclides 26Al, 36Cl, and 41Ca can be ejected by the winds of a variety of WR stars at relative levels compatible with the meteoritic observations are also in qualitative agreement with the results of Arnould et al. (1997, 2006). Because these authors used 107Pd to calculate f, our results are not directly comparable. However, if we consider the delay times shown in Figures 5–7 of Arnould et al. (2006), we find similar values for the delay time for the Ca ratio, between 105.5 and 106 yr. Their delay time for the Cl ratio for their 40 M @@ -705,4 +705,4 @@ ELTE Eötvös Loránd University, Institute of Physics, Budapest 1117, Pázmány NollettK. M. 2006NuPhA77752006NuPhA.777....5W10.1016/j.nuclphysa.2005.07.015 YoungE. D. - 2014E&PSL392162014E&PSL.392...16Y10.1016/j.epsl.2014.02.014 \ No newline at end of file + 2014E&PSL392162014E&PSL.392...16Y10.1016/j.epsl.2014.02.014 diff --git a/tests/test_jats.py b/tests/test_jats.py index aa808a6..3655816 100644 --- a/tests/test_jats.py +++ b/tests/test_jats.py @@ -54,9 +54,6 @@ def test_jats(self): output_data = json.loads(output_text) parsed = parser.parse(input_data) - #wuw = test_outfile+".wuw" - #with open(wuw,"w") as fw: - # fw.write(json.dumps(parsed, indent=2)) # make sure this is valid schema try: From deb72c73f4ade5fb909f462b26c06f2d430ac337 Mon Sep 17 00:00:00 2001 From: Matthew Templeton Date: Mon, 10 Jul 2023 14:22:16 -0400 Subject: [PATCH 3/3] fix: fixes issue 50, multiparagraph abstract modified: adsingestp/parsers/jats.py new file: tests/stubdata/input/jats_a+a_multiparagraph_abstract.xml new file: tests/stubdata/output/jats_a+a_multiparagraph_abstract.json modified: tests/test_jats.py --- adsingestp/parsers/jats.py | 14 +- .../jats_a+a_multiparagraph_abstract.xml | 2 + .../jats_a+a_multiparagraph_abstract.json | 397 ++++++++++++++++++ tests/test_jats.py | 1 + 4 files changed, 410 insertions(+), 4 deletions(-) create mode 100644 tests/stubdata/input/jats_a+a_multiparagraph_abstract.xml create mode 100644 tests/stubdata/output/jats_a+a_multiparagraph_abstract.json diff --git a/adsingestp/parsers/jats.py b/adsingestp/parsers/jats.py index 3f108e0..01f2292 100644 --- a/adsingestp/parsers/jats.py +++ b/adsingestp/parsers/jats.py @@ -543,10 +543,16 @@ def _parse_title_abstract(self): self.base_metadata["title"] = self._detag(title, self.JATS_TAGSET["title"]).strip() if self.article_meta.find("abstract") and self.article_meta.find("abstract").find("p"): - abstract = self._detag( - self.article_meta.find("abstract").find("p"), self.JATS_TAGSET["abstract"] - ) - self.base_metadata["abstract"] = abstract + abstract_all = self.article_meta.find("abstract").find_all("p") + abstract_paragraph_list = list() + for paragraph in abstract_all: + para = self._detag(paragraph, self.JATS_TAGSET["abstract"]) + abstract_paragraph_list.append(para) + self.base_metadata["abstract"] = "\n".join(abstract_paragraph_list) + # abstract = self._detag( + # self.article_meta.find("abstract").find("p"), self.JATS_TAGSET["abstract"] + # ) + # self.base_metadata["abstract"] = abstract if title_fn_list: self.base_metadata["abstract"] += " " + " ".join(title_fn_list) diff --git a/tests/stubdata/input/jats_a+a_multiparagraph_abstract.xml b/tests/stubdata/input/jats_a+a_multiparagraph_abstract.xml new file mode 100644 index 0000000..1e071bf --- /dev/null +++ b/tests/stubdata/input/jats_a+a_multiparagraph_abstract.xml @@ -0,0 +1,2 @@ + +

aahttps://www.aanda.org Astronomy & Astrophysics A&A 0004-6361 1432-0746 EDP Sciences 10.1051/0004-6361/202142959 aa42959-21 2211.066292023A%26A...670A..13L Stellar structure and evolution V838 Mon: A slow waking up of Sleeping Beauty?

Full Tables 2 and 4 and spectra (FITS files) are only available at the CDS via anonymous ftp to cdsarc.cds.unistra.fr (130.79.128.5) or via https://cdsarc.cds.unistra.fr/viz-bin/cat/J/A+A/670/A13

0000-0003-2196-9091 Liimets T. 1 2 Kolka I. 2 0000-0002-4502-6330 Kraus M. 1 Eenmäe T. 2 Tuvikene T. 2 Augusteijn T. 3 4 Antunes Amaral L. 5 0000-0001-6316-9880 Djupvik A. A. 3 4 Telting J. H. 3 4 Deshev B. 1 Kankare E. 6 Kankare J. 1 0000-0003-3811-4591 Lindberg J. E. 1 Amby T. M. 7 Pursimo T. 3 4 Somero A. 6 Thygesen A. 8 9 Strøm P. A. Astronomical Institute, Czech Academy of Sciences, Fričova 298, 25165 Ondřejov, Czech Republic Tartu Observatory, University of Tartu, Observatooriumi 1, 61602 Tõravere, Estonia Nordic Optical Telescope, Rambla José Ana Fernández, Pérez 7, 38711 Breña Baja, Spain Department of Physics and Astronomy, Aarhus University, Munkegade 120, 8000 Aarhus C, Denmark Instituto de Física y Astronomía, Universidad de Valparaíso, Gran Bretaña 1111, Playa Ancha, Valparaíso 2360102, Chile Tuorla Observatory, Department of Physics and Astronomy, University of Turku, 20014 Turku, Finland Viborg Katedralskole, Gl.Skivevej 2, 8800 Viborg, Denmark Department of Physics, University of Warwick, Coventry CV4 7AL, UK Institut d’astrophysique de Paris, CNRS, UMR 7095 & Sorbonne Universités, UPMC Paris 6, 98bis Boulevard Arago, 75014 Paris, France

e-mail: tiina.liimets@asu.cas.cz

2701202327012023 02 2023 670aa/2023/02 A13 20 12 2021 12 11 2022 © T. Liimets et al. 2023 2023 T. Liimets et al. Open Access article, published by EDP Sciences, under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. This article is published in open access under the Subscribe-to-Open model. Subscribe to A&A to support open access publication.

Context. V838 Monocerotis is a peculiar binary that underwent an immense stellar explosion in 2002, leaving behind an expanding cool supergiant and a hot B3V companion. Five years after the outburst, the B3V companion disappeared from view, and has not returned to its original state.

Aims. We investigate the changes in the light curve and spectral features to explain the behaviour of V838 Mon during the current long-lasting minimum.

Methods. A monitoring campaign has been performed over the past 13 years with the Nordic Optical Telescope to obtain optical photometric and spectroscopic data. The datasets are used to analyse the temporal evolution of the spectral features and the spectral energy distribution, and to characterise the object.

Results. Our photometric data show a steady brightening in all bands over the past 13 years, which is particularly prominent in the blue. This rise is also reflected in the spectra, showing a gradual relative increase in the continuum flux at shorter wavelengths. In addition, a slow brightening of the Hα emission line starting in 2015 was detected. These changes might imply that the B3V companion is slowly reappearing. During the same time interval, our analysis reveals a considerable change in the observed colours of the object along with a steady decrease in the strength and width of molecular absorption bands in our low-resolution spectra. These changes suggest a rising temperature of the cool supergiant along with a weakening of its wind, most likely combined with a slow recovery of the secondary due to the evaporation of the dust and accretion of the material from the shell in which the hot companion is embedded. From our medium-resolution spectra, we find that the heliocentric radial velocity of the atomic absorption line of Ti I 6556.06 Å has been stable for more than a decade. We propose that Ti I lines are tracing the velocity of the red supergiant in V838 Mon, and do not represent the infalling matter as previously stated.

stars: individual: V838 Mon stars: evolution stars: peculiar stars: mass-loss techniques: photometric techniques: spectroscopic Czech Science Foundation20-00150S19-18647SEuropean Union’s Framework Programme for Research and Innovation Horizon 2020823734 idline A&A 670, A13 (2023) cover_date February 2023 first_month 02 last_month 02 first_year 2023 last_year 2023 open-access yes

We thank the anonymous referees for the constructive suggestions that helped to improve the manuscript. Based on observations made with the Nordic Optical Telescope, owned in collaboration by the University of Turku and Aarhus University, and operated jointly by Aarhus University, the University of Turku and the University of Oslo, representing Denmark, Finland and Norway, the University of Iceland and Stockholm University at the Observatorio del Roque de los Muchachos, La Palma, Spain, of the Instituto de Astrofisica de Canarias. The data presented here were obtained with ALFOSC, which is provided by the Instituto de Astrofisica de Andalucia (IAA) under a joint agreement with the University of Copenhagen and NOT. Observations on 2019 November 29 were done as part of the NOT science school for upper secondary school students organised in Tuorla Observatory. In addition, this paper uses observations made at the South African Astronomical Observatory (SAAO). Analyses done in this paper use a GAIA shoftware. GAIA is a derivative of the Skycat catalogue and image display tool, developed as part of the VLT project at ESO. Skycat and GAIA are free software under the terms of the GNU copyright. The 3D facilities in GAIA use the VTK library. For further details, see http://starlink.eao.hawaii.edu/starlink T.L., M.K., and B.D. acknowledge financial support from the Czech Science Foundation (GA ČR, grant numbers 20-00150S and 19-18647S). The Astronomical Institute of the Czech Academy of Sciences is supported by the project RVO:67985815. This project has received funding from the European Union’s Framework Programme for Research and Innovation Horizon 2020 (2014–2020) under the Marie Skłodowska-Curie Grant Agreement No. 823734. All the data from the NOT can be acquired through the NOT FITS Header Archive (http://www.not.iac.es/observing/forms/fitsarchive/). The rest of the data can be obtained from TL on a reasonable request.

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diff --git a/tests/stubdata/output/jats_a+a_multiparagraph_abstract.json b/tests/stubdata/output/jats_a+a_multiparagraph_abstract.json new file mode 100644 index 0000000..9b9f3f3 --- /dev/null +++ b/tests/stubdata/output/jats_a+a_multiparagraph_abstract.json @@ -0,0 +1,397 @@ +{ + "recordData": { + "createdTime": "", + "parsedTime": "", + "loadType": "fromFile", + "loadFormat": "JATS", + "loadLocation": "", + "recordOrigin": "" + }, + "editorialHistory": { + "receivedDates": [ + "2021-12-20" + ], + "acceptedDate": "2022-11-12" + }, + "pubDate": { + "electrDate": "2023-01-27", + "printDate": "2023-02-00" + }, + "publication": { + "pubName": "Astronomy & Astrophysics", + "publisher": "EDP Sciences", + "issueNum": "None", + "volumeNum": "670", + "pubYear": "2023", + "ISSN": [ + { + "pubtype": "ppub", + "issnString": "0004-6361" + }, + { + "pubtype": "epub", + "issnString": "1432-0746" + } + ] + }, + "persistentIDs": [ + { + "DOI": "10.1051/0004-6361/202142959" + } + ], + "publisherIDs": [ + { + "attribute": "publisher-id", + "Identifier": "aa42959-21" + }, + { + "attribute": "other", + "Identifier": "2023A%26A...670A..13L" + } + ], + "pagination": { + "pageCount": "13", + "electronicID": "A13" + }, + "authors": [ + { + "name": { + "surname": "Liimets", + "given_name": "T." + }, + "affiliation": [ + { + "affPubRaw": "Astronomical Institute, Czech Academy of Sciences, Fri\u010dova 298, 25165 Ond\u0159ejov, Czech Republic", + "affPubID": "AFF1" + }, + { + "affPubRaw": "Tartu Observatory, University of Tartu, Observatooriumi 1, 61602 T\u00f5ravere, Estonia", + "affPubID": "AFF2" + } + ], + "attrib": { + "orcid": "0000-0003-2196-9091" + } + }, + { + "name": { + "surname": "Kolka", + "given_name": "I." + }, + "affiliation": [ + { + "affPubRaw": "Tartu Observatory, University of Tartu, Observatooriumi 1, 61602 T\u00f5ravere, Estonia", + "affPubID": "AFF2" + } + ] + }, + { + "name": { + "surname": "Kraus", + "given_name": "M." + }, + "affiliation": [ + { + "affPubRaw": "Astronomical Institute, Czech Academy of Sciences, Fri\u010dova 298, 25165 Ond\u0159ejov, Czech Republic", + "affPubID": "AFF1" + } + ], + "attrib": { + "orcid": "0000-0002-4502-6330" + } + }, + { + "name": { + "surname": "Eenm\u00e4e", + "given_name": "T." + }, + "affiliation": [ + { + "affPubRaw": "Tartu Observatory, University of Tartu, Observatooriumi 1, 61602 T\u00f5ravere, Estonia", + "affPubID": "AFF2" + } + ] + }, + { + "name": { + "surname": "Tuvikene", + "given_name": "T." + }, + "affiliation": [ + { + "affPubRaw": "Tartu Observatory, University of Tartu, Observatooriumi 1, 61602 T\u00f5ravere, Estonia", + "affPubID": "AFF2" + } + ] + }, + { + "name": { + "surname": "Augusteijn", + "given_name": "T." + }, + "affiliation": [ + { + "affPubRaw": "Nordic Optical Telescope, Rambla Jos\u00e9 Ana Fern\u00e1ndez, P\u00e9rez 7, 38711 Bre\u00f1a Baja, Spain", + "affPubID": "AFF3" + }, + { + "affPubRaw": "Department of Physics and Astronomy, Aarhus University, Munkegade 120, 8000 Aarhus C, Denmark", + "affPubID": "AFF4" + } + ] + }, + { + "name": { + "surname": "Antunes Amaral", + "given_name": "L." + }, + "affiliation": [ + { + "affPubRaw": "Instituto de F\u00edsica y Astronom\u00eda, Universidad de Valpara\u00edso, Gran Breta\u00f1a 1111, Playa Ancha, Valpara\u00edso 2360102, Chile", + "affPubID": "AFF5" + } + ] + }, + { + "name": { + "surname": "Djupvik", + "given_name": "A. 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A." + } + } + ], + "title": { + "textEnglish": "V838 Mon: A slow waking up of Sleeping Beauty?" + }, + "abstract": { + "textEnglish": "Context. V838 Monocerotis is a peculiar binary that underwent an immense stellar explosion in 2002, leaving behind an expanding cool supergiant and a hot B3V companion. Five years after the outburst, the B3V companion disappeared from view, and has not returned to its original state.\nAims. We investigate the changes in the light curve and spectral features to explain the behaviour of V838 Mon during the current long-lasting minimum.\nMethods. A monitoring campaign has been performed over the past 13 years with the Nordic Optical Telescope to obtain optical photometric and spectroscopic data. The datasets are used to analyse the temporal evolution of the spectral features and the spectral energy distribution, and to characterise the object.\nResults. Our photometric data show a steady brightening in all bands over the past 13 years, which is particularly prominent in the blue. This rise is also reflected in the spectra, showing a gradual relative increase in the continuum flux at shorter wavelengths. In addition, a slow brightening of the H\u03b1 emission line starting in 2015 was detected. These changes might imply that the B3V companion is slowly reappearing. During the same time interval, our analysis reveals a considerable change in the observed colours of the object along with a steady decrease in the strength and width of molecular absorption bands in our low-resolution spectra. These changes suggest a rising temperature of the cool supergiant along with a weakening of its wind, most likely combined with a slow recovery of the secondary due to the evaporation of the dust and accretion of the material from the shell in which the hot companion is embedded. From our medium-resolution spectra, we find that the heliocentric radial velocity of the atomic absorption line of Ti I 6556.06 \u00c5 has been stable for more than a decade. We propose that Ti I lines are tracing the velocity of the red supergiant in V838 Mon, and do not represent the infalling matter as previously stated." + }, + "references": [ + " Af\u015far, M., & Bond, H. E. 2007, AJ, 133, 387 ", + " Bessell, M. S., & Brett, J. M. 1988, PASP, 100, 1134 ", + " Bond, H. E. 2006, ATel, 966, 1 ", + " Bond, H. E. 2007, ASP Conf. Ser., 363, 130 ", + " Bond, H. E., Henden, A., Levay, Z. G., et al. 2003, Nature, 422, 405 ", + " Brown, N. J., Waagen, E. O., Scovil, C., et al. 2002, IAU Circ., 7785, 1 ", + " Cardelli, J. A., Clayton, G. C., & Mathis, J. S. 1989, ApJ, 345, 245 ", + " Casagrande, L., & VandenBerg, D. A. 2014, MNRAS, 444, 392 ", + " Chesneau, O., Millour, F., De Marco, O., et al. 2014, A&A, 569, L3 ", + " Crause, L. A., Lawson, W. 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