.vmdrc

# Desaturated colors
color change rgb  0 0.1 0.2 0.7 ;# blue
color change rgb  1 0.7 0.2 0.1 ;# red
color change rgb  3 0.7 0.4 0.0 ;# orange
color change rgb  4 0.8 0.7 0.1 ;# yellow
color change rgb  7 0.1 0.7 0.2 ;# green
#color change rgb 10 0.1 0.7 0.8 ;# cyan
color change rgb 11 0.6 0.1 0.6 ;# purple

# New shortcuts for display options
user add key o {display projection orthographic} ;
user add key p {display projection perspective} ;
user add key d { if {[display get rendermode] != "Normal" } {display rendermode Normal} {display rendermode GLSL}} ;
user add key D { if {[display get depthcue] != "on" } {display depthcue on} {display depthcue off}} ;

# Predefined color schemas
user add key v { color Display {Background} white; color Axes {Labels} black; } ;
user add key b { color Display {Background} black; color Axes {Labels} white; } ;

# Saving views
proc save_viewpoint {} {
  global viewpoints
  if [info exists viewpoints] {unset viewpoints} 
  # get the current matricies
  foreach mol [molinfo list] {
    set viewpoints($mol) [molinfo $mol get {center_matrix rotate_matrix scale_matrix global_matrix}]
  }
}
proc restore_viewpoint {} { 
  global viewpoints
  foreach mol [molinfo list] {
    puts "Trying $mol"
    if [info exists viewpoints($mol)] {
      molinfo $mol set {center_matrix rotate_matrix scale_matrix global_matrix} $viewpoints($mol)
    }
  }
}
user add key q "save_viewpoint"
user add key w "restore_viewpoint"

# Open windows
menu main on ;
menu graphics on ;

# set up sensible default display options
mol default material Diffuse ;
display rendermode GLSL ;
display projection orthographic ;
display nearclip set 0 ; # Why should it be > 0?
animate style once ;