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DESCRIPTION
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DESCRIPTION
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Package: assignPOP
Type: Package
Title: Population Assignment using Genetic, Non-Genetic or Integrated Data in a
Machine Learning Framework
Version: 1.3.0
Author: Kuan-Yu (Alex) Chen [aut, cre], Elizabeth A. Marschall [aut], Michael
G. Sovic [aut], Anthony C. Fries [aut], H. Lisle Gibbs [aut], Stuart A. Ludsin
[aut]
Maintainer: Kuan-Yu (Alex) Chen <alexkychen@gmail.com>
Description: Use Monte-Carlo and K-fold cross-validation coupled with machine-
learning classification algorithms to perform population assignment, with
functionalities of evaluating discriminatory power of independent training
samples, identifying informative loci, reducing data dimensionality for genomic
data, integrating genetic and non-genetic data, and visualizing results.
URL: https://github.com/alexkychen/assignPOP
Depends:
R (>= 2.3.2)
Imports:
caret,
doParallel,
e1071,
foreach,
ggplot2,
MASS,
parallel,
randomForest,
reshape2,
stringr,
tree,
rlang,
Suggests:
gtable,
iterators,
klaR,
stringi,
knitr,
rmarkdown,
testthat
License: GPL (>= 2)
RoxygenNote: 7.3.1
Encoding: UTF-8