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Contrast settings #11

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slimyberry opened this issue Jun 12, 2020 · 0 comments
Open

Contrast settings #11

slimyberry opened this issue Jun 12, 2020 · 0 comments

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@slimyberry
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I need help with preprocessing medical image data.

I have 100 nifti images.

I want to extract 5 slices from each of these as jpegs.

However, I work in a particular contrast setting with my nifti files when I segment them. How do I ensure that the jpeg file is in my contrast window?

For eg, I open my nifti in ITK snap and change the window to 60-360 and look at the visibility in that setting. This is lost on conversion though.

Is there any way to do this via your software or otherwise? Thanks
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@slimyberry