diff --git a/CHANGELOG.md b/CHANGELOG.md index 9a521d2..7eae99d 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -6,7 +6,17 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0. ## [Unreleased] -[Unreleased]: https://github.com/althonos/pyhmmer/compare/v0.10.11...HEAD +[Unreleased]: https://github.com/althonos/pyhmmer/compare/v0.10.12...HEAD + + +## [v0.10.12] - 2024-04-25 +[v0.10.12]: https://github.com/althonos/pyhmmer/compare/v0.10.11...v0.10.12 + +### Fixed +- `HMM.__setstate__` not properly extracting the cutoff from `pickle` state for some HMMs ([#67](https://github.com/althonos/pyhmmer/issues/67)). + +### Changed +- Update and remove some test files to reduce size of distributed package data. ## [v0.10.11] - 2024-03-27 @@ -16,7 +26,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0. - Compilation of Easel and HMMER code not using SSE4.1 extensions. -## [v0.10.10] - 2024-03-18 +## [v0.10.10] - 2024-03-18 - YANKED [v0.10.10]: https://github.com/althonos/pyhmmer/compare/v0.10.9...v0.10.10 ### Fixed @@ -24,14 +34,14 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0. - Fix handling of NULL buffers passed to `read` and `write` methods of `fopencookie`. -## [v0.10.9] - 2024-03-12 +## [v0.10.9] - 2024-03-12 - YANKED [v0.10.9]: https://github.com/althonos/pyhmmer/compare/v0.10.8...v0.10.9 ### Fixed - Reallocation issue causing segmentation faults in `nhmmer` with more than 64 sequences ([#62](https://github.com/althonos/pyhmmer/issues/62)). -## [v0.10.8] - 2024-03-06 +## [v0.10.8] - 2024-03-06 - YANKED [v0.10.8]: https://github.com/althonos/pyhmmer/compare/v0.10.7...v0.10.8 ### Added @@ -47,7 +57,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0. - `SequenceFile` and `MSAFile` crashing with a segmentation fault when given the path to a folder rather than a file. -## [v0.10.7] - 2024-03-04 +## [v0.10.7] - 2024-03-04 - YANKED [v0.10.7]: https://github.com/althonos/pyhmmer/compare/v0.10.6...v0.10.7 ### Added @@ -59,7 +69,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0. - `pyhmmer.hmmer` dispatchers possibly dead-locking on background thread errors ([#60](https://github.com/althonos/pyhmmer/issues/60)). -## [v0.10.6] - 2024-02-20 +## [v0.10.6] - 2024-02-20 - YANKED [v0.10.6]: https://github.com/althonos/pyhmmer/compare/v0.10.5...v0.10.6 ### Added @@ -73,7 +83,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0. - Memory leak caused by alphabet allocation in `Pipeline._scan_loop_file`. -## [v0.10.5] - 2024-02-16 +## [v0.10.5] - 2024-02-16 - YANKED [v0.10.5]: https://github.com/althonos/pyhmmer/compare/v0.10.4...v0.10.5 ### Added @@ -93,7 +103,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0. - Memory leak caused by string duplication in `__getbuffer__` methods of `Matrix` and `Vector` types. -## [v0.10.4] - 2023-10-29 +## [v0.10.4] - 2023-10-29 - YANKED [v0.10.4]: https://github.com/althonos/pyhmmer/compare/v0.10.3...v0.10.4 ### Added @@ -107,7 +117,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0. - Syntax errors in type annotation files. -## [v0.10.3] - 2023-10-22 +## [v0.10.3] - 2023-10-22 - YANKED [v0.10.3]: https://github.com/althonos/pyhmmer/compare/v0.10.2...v0.10.3 ### Added @@ -125,14 +135,14 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0. - Relax tolerance of HMM validation in `TraceAligner.align_traces`. -## [v0.10.2] - 2023-08-20 +## [v0.10.2] - 2023-08-20 - YANKED [v0.10.2]: https://github.com/althonos/pyhmmer/compare/v0.10.1...v0.10.2 ### Fixed - Invalid buffer write in `DigitalSequenceBlock.translate` ([#50](https://github.com/althonos/pyhmmer/issues/50)). -## [v0.10.1] - 2023-08-17 +## [v0.10.1] - 2023-08-17 - YANKED [v0.10.1]: https://github.com/althonos/pyhmmer/compare/v0.10.0...v0.10.1 ### Added @@ -143,7 +153,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0. - `pyhmmer.plan7.HMM` constructor setting a consensus string forcefully. -## [v0.10.0] - 2023-08-16 +## [v0.10.0] - 2023-08-16 - YANKED [v0.10.0]: https://github.com/althonos/pyhmmer/compare/v0.9.0...v0.10.0 ### Added diff --git a/pyhmmer/__init__.py b/pyhmmer/__init__.py index db7fdb2..219e181 100644 --- a/pyhmmer/__init__.py +++ b/pyhmmer/__init__.py @@ -32,7 +32,7 @@ __author__ = "Martin Larralde " __license__ = "MIT" -__version__ = "0.10.11" +__version__ = "0.10.12" __all__ = [ "errors", "easel",