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Runner_NHPV1V2_2023.m
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Runner_NHPV1V2_2023.m
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addpath(genpath(['A:\Amydis\NewDataJan2023']));
% this function create profile.mat in each image directory; profile.mat stores file names in each channel
createproc_GC_TMK1
% this function invokes sc_handseg.m, to crop each individual region
handseg_GC_TMK1
% this function create profile.mat in each image directory; profile.mat stores file names in each channel
createproc_GC_MKN7
% this function invokes sc_handseg.m, to crop each individual region
handseg_GC_MKN7
%----------------
% this function create profile.mat in each image directory; profile.mat stores file names in each channel
createproc_GC_SNU1
% this function invokes sc_handseg.m, to crop each individual region
handseg_GC_SNU1
% this function create profile.mat in each image directory; profile.mat stores file names in each channel
createproc_GC_AZ521
% this function invokes sc_handseg.m, to crop each individual region
handseg_GC_AZ521
% this function create profile.mat in each image directory; profile.mat stores file names in each channel
createproc_GC_MKN45
% this function invokes sc_handseg.m, to crop each individual region
handseg_GC_MKN45
%------------
% this function create profile.mat in each image directory; profile.mat stores file names in each channel
createproc_GC_SCH
% this function invokes sc_handseg.m, to crop each individual region
handseg_GC_SCH
% this function create profile.mat in each image directory; profile.mat stores file names in each channel
createproc_GC_HS746T
% this function invokes sc_handseg.m, to crop each individual region
handseg_GC_HS746T
%----------------
% cell level feature calculation
SC_CellLevelFeatures_Wrapper
% combine features and do t-test
TTest_Features