diff --git a/cran-comments.md b/cran-comments.md index 44a4c477..e5e605c5 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -1,22 +1,22 @@ ## Test environments -* local macOS (10.12) install, R 3.3.1 +* local macOS (10.12.1) install, R 3.3.2 * ubuntu 12.04 (on travis-ci), R 3.3.1 * win-builder (release and devel) ## R CMD check results -* For macOS and ubuntu there were no ERRORs, WARNINGs or NOTEs. +For macOS and ubuntu there were no ERRORs, WARNINGs or NOTEs. -* for win-builder release and devel versions there was one note: +For win-builder release and devel versions there was one note: - * checking CRAN incoming feasibility ... NOTE - Maintainer: 'Andrew C. Hooker ' - Possibly mis-spelled words in DESCRIPTION: - pharmacometric (19:9) +* checking CRAN incoming feasibility ... NOTE + + Maintainer: 'Andrew C. Hooker ' + + Possibly mis-spelled words in DESCRIPTION: + pharmacometric (19:9) - - The first portion is just stating that I am the maintainer. - - The second portion does not recognize the well known word "pharmacometric", - see for example: https://en.wikipedia.org/wiki/Pharmacometrics - +The first portion is just stating that I am the maintainer. + +The second portion does not recognize the well known word "pharmacometric", +see for example: https://en.wikipedia.org/wiki/Pharmacometrics ## Downstream dependencies There are currently no downstream dependencies for this package. diff --git a/man/calc_ofv_and_fim.Rd b/man/calc_ofv_and_fim.Rd index 5bc9a28d..81a38923 100644 --- a/man/calc_ofv_and_fim.Rd +++ b/man/calc_ofv_and_fim.Rd @@ -176,6 +176,9 @@ calc_ofv_and_fim(poped.db) Other E-family: \code{\link{ed_laplace_ofv}}, \code{\link{ed_mftot}}, \code{\link{evaluate.e.ofv.fim}} +Other evaluate_FIM: \code{\link{evaluate.e.ofv.fim}}, + \code{\link{evaluate.fim}}, \code{\link{ofv_fim}} + Other FIM: \code{\link{LinMatrixH}}, \code{\link{LinMatrixLH}}, \code{\link{LinMatrixL_occ}}, \code{\link{ed_laplace_ofv}}, \code{\link{ed_mftot}}, @@ -190,8 +193,5 @@ Other FIM: \code{\link{LinMatrixH}}, \code{\link{mftot6}}, \code{\link{mftot7}}, \code{\link{mftot}}, \code{\link{mf}}, \code{\link{ofv_criterion}}, \code{\link{ofv_fim}} - -Other evaluate_FIM: \code{\link{evaluate.e.ofv.fim}}, - \code{\link{evaluate.fim}}, \code{\link{ofv_fim}} } diff --git a/man/evaluate.e.ofv.fim.Rd b/man/evaluate.e.ofv.fim.Rd index 2bc1b9eb..8edc0892 100644 --- a/man/evaluate.e.ofv.fim.Rd +++ b/man/evaluate.e.ofv.fim.Rd @@ -205,6 +205,9 @@ output$E_ofv Other E-family: \code{\link{calc_ofv_and_fim}}, \code{\link{ed_laplace_ofv}}, \code{\link{ed_mftot}} +Other evaluate_FIM: \code{\link{calc_ofv_and_fim}}, + \code{\link{evaluate.fim}}, \code{\link{ofv_fim}} + Other FIM: \code{\link{LinMatrixH}}, \code{\link{LinMatrixLH}}, \code{\link{LinMatrixL_occ}}, \code{\link{calc_ofv_and_fim}}, @@ -219,8 +222,5 @@ Other FIM: \code{\link{LinMatrixH}}, \code{\link{mftot7}}, \code{\link{mftot}}, \code{\link{mf}}, \code{\link{ofv_criterion}}, \code{\link{ofv_fim}} - -Other evaluate_FIM: \code{\link{calc_ofv_and_fim}}, - \code{\link{evaluate.fim}}, \code{\link{ofv_fim}} } diff --git a/man/evaluate.fim.Rd b/man/evaluate.fim.Rd index 8057d625..658800ba 100644 --- a/man/evaluate.fim.Rd +++ b/man/evaluate.fim.Rd @@ -144,6 +144,14 @@ get_rse(FIM.7,poped.db,fim.calc.type=7) } \seealso{ +Other evaluate_design: \code{\link{evaluate_design}}, + \code{\link{get_rse}}, \code{\link{model_prediction}}, + \code{\link{plot_efficiency_of_windows}}, + \code{\link{plot_model_prediction}} + +Other evaluate_FIM: \code{\link{calc_ofv_and_fim}}, + \code{\link{evaluate.e.ofv.fim}}, \code{\link{ofv_fim}} + Other FIM: \code{\link{LinMatrixH}}, \code{\link{LinMatrixLH}}, \code{\link{LinMatrixL_occ}}, \code{\link{calc_ofv_and_fim}}, @@ -159,13 +167,5 @@ Other FIM: \code{\link{LinMatrixH}}, \code{\link{mftot7}}, \code{\link{mftot}}, \code{\link{mf}}, \code{\link{ofv_criterion}}, \code{\link{ofv_fim}} - -Other evaluate_FIM: \code{\link{calc_ofv_and_fim}}, - \code{\link{evaluate.e.ofv.fim}}, \code{\link{ofv_fim}} - -Other evaluate_design: \code{\link{evaluate_design}}, - \code{\link{get_rse}}, \code{\link{model_prediction}}, - \code{\link{plot_efficiency_of_windows}}, - \code{\link{plot_model_prediction}} } diff --git a/man/feps.add.Rd b/man/feps.add.Rd index eb6a1af2..f3c96bed 100644 --- a/man/feps.add.Rd +++ b/man/feps.add.Rd @@ -76,9 +76,6 @@ get_rse(FIM,poped.db) } \seealso{ -Other RUV_models: \code{\link{feps.add.prop}}, - \code{\link{feps.prop}} - Other models: \code{\link{feps.add.prop}}, \code{\link{feps.prop}}, \code{\link{ff.PK.1.comp.oral.md.CL}}, @@ -87,5 +84,8 @@ Other models: \code{\link{feps.add.prop}}, \code{\link{ff.PK.1.comp.oral.sd.KE}}, \code{\link{ff.PKPD.1.comp.oral.md.CL.imax}}, \code{\link{ff.PKPD.1.comp.sd.CL.emax}} + +Other RUV_models: \code{\link{feps.add.prop}}, + \code{\link{feps.prop}} } diff --git a/man/feps.add.prop.Rd b/man/feps.add.prop.Rd index 7aac44d9..36c67f7c 100644 --- a/man/feps.add.prop.Rd +++ b/man/feps.add.prop.Rd @@ -81,9 +81,6 @@ get_rse(FIM,poped.db) } \seealso{ -Other RUV_models: \code{\link{feps.add}}, - \code{\link{feps.prop}} - Other models: \code{\link{feps.add}}, \code{\link{feps.prop}}, \code{\link{ff.PK.1.comp.oral.md.CL}}, @@ -92,5 +89,8 @@ Other models: \code{\link{feps.add}}, \code{\link{ff.PK.1.comp.oral.sd.KE}}, \code{\link{ff.PKPD.1.comp.oral.md.CL.imax}}, \code{\link{ff.PKPD.1.comp.sd.CL.emax}} + +Other RUV_models: \code{\link{feps.add}}, + \code{\link{feps.prop}} } diff --git a/man/feps.prop.Rd b/man/feps.prop.Rd index 1e123a13..3088a778 100644 --- a/man/feps.prop.Rd +++ b/man/feps.prop.Rd @@ -91,9 +91,6 @@ get_rse(FIM,poped.db) } \seealso{ -Other RUV_models: \code{\link{feps.add.prop}}, - \code{\link{feps.add}} - Other models: \code{\link{feps.add.prop}}, \code{\link{feps.add}}, \code{\link{ff.PK.1.comp.oral.md.CL}}, @@ -102,5 +99,8 @@ Other models: \code{\link{feps.add.prop}}, \code{\link{ff.PK.1.comp.oral.sd.KE}}, \code{\link{ff.PKPD.1.comp.oral.md.CL.imax}}, \code{\link{ff.PKPD.1.comp.sd.CL.emax}} + +Other RUV_models: \code{\link{feps.add.prop}}, + \code{\link{feps.add}} } diff --git a/man/model_prediction.Rd b/man/model_prediction.Rd index a593dc25..82fc6d2b 100644 --- a/man/model_prediction.Rd +++ b/man/model_prediction.Rd @@ -224,12 +224,12 @@ model_prediction(design=design_4,DV=TRUE,dosing=dosing_4,model_num_points = c(10 } \seealso{ -Other Simulation: \code{\link{plot_efficiency_of_windows}}, - \code{\link{plot_model_prediction}} - Other evaluate_design: \code{\link{evaluate.fim}}, \code{\link{evaluate_design}}, \code{\link{get_rse}}, \code{\link{plot_efficiency_of_windows}}, \code{\link{plot_model_prediction}} + +Other Simulation: \code{\link{plot_efficiency_of_windows}}, + \code{\link{plot_model_prediction}} } diff --git a/man/ofv_fim.Rd b/man/ofv_fim.Rd index 9d16c77b..ed5314d5 100644 --- a/man/ofv_fim.Rd +++ b/man/ofv_fim.Rd @@ -105,6 +105,10 @@ ofv_fim(FIM,poped.db,ofv_calc_type=7) # 1/sum(get_rse(FIM,poped.db,use_percent=F } \seealso{ +Other evaluate_FIM: \code{\link{calc_ofv_and_fim}}, + \code{\link{evaluate.e.ofv.fim}}, + \code{\link{evaluate.fim}} + Other FIM: \code{\link{LinMatrixH}}, \code{\link{LinMatrixLH}}, \code{\link{LinMatrixL_occ}}, \code{\link{calc_ofv_and_fim}}, @@ -120,9 +124,5 @@ Other FIM: \code{\link{LinMatrixH}}, \code{\link{mftot6}}, \code{\link{mftot7}}, \code{\link{mftot}}, \code{\link{mf}}, \code{\link{ofv_criterion}} - -Other evaluate_FIM: \code{\link{calc_ofv_and_fim}}, - \code{\link{evaluate.e.ofv.fim}}, - \code{\link{evaluate.fim}} } diff --git a/man/plot_efficiency_of_windows.Rd b/man/plot_efficiency_of_windows.Rd index b58c46c5..eac1c2c2 100644 --- a/man/plot_efficiency_of_windows.Rd +++ b/man/plot_efficiency_of_windows.Rd @@ -137,14 +137,14 @@ plot_efficiency_of_windows(poped.db, } \seealso{ -Other Graphics: \code{\link{plot_model_prediction}} - -Other Simulation: \code{\link{model_prediction}}, - \code{\link{plot_model_prediction}} - Other evaluate_design: \code{\link{evaluate.fim}}, \code{\link{evaluate_design}}, \code{\link{get_rse}}, \code{\link{model_prediction}}, \code{\link{plot_model_prediction}} + +Other Graphics: \code{\link{plot_model_prediction}} + +Other Simulation: \code{\link{model_prediction}}, + \code{\link{plot_model_prediction}} } diff --git a/man/plot_model_prediction.Rd b/man/plot_model_prediction.Rd index 641e79c7..32a6bc53 100644 --- a/man/plot_model_prediction.Rd +++ b/man/plot_model_prediction.Rd @@ -128,14 +128,14 @@ plot_model_prediction(poped.db,IPRED=TRUE,DV=TRUE) } \seealso{ -Other Graphics: \code{\link{plot_efficiency_of_windows}} - -Other Simulation: \code{\link{model_prediction}}, - \code{\link{plot_efficiency_of_windows}} - Other evaluate_design: \code{\link{evaluate.fim}}, \code{\link{evaluate_design}}, \code{\link{get_rse}}, \code{\link{model_prediction}}, \code{\link{plot_efficiency_of_windows}} + +Other Graphics: \code{\link{plot_efficiency_of_windows}} + +Other Simulation: \code{\link{model_prediction}}, + \code{\link{plot_efficiency_of_windows}} }