Simple build script

build.sh

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+mkdir database/
+cd src/
+python build_db.py
+Rscript db_summary.R | tee ../database/vdjdb.summary.txt
+cd ..
+
+STAMP=`date +%Y-%m-%d`-`git rev-parse --short HEAD`
+
+cd database/
+cp ../metadata/vdjdb.meta.txt vdjdb.meta.txt
+cp ../LICENSE.txt LICENSE.txt
+zip -r vdjdb-$STAMP.zip vdjdb.meta.txt vdjdb.txt LICENSE.txt

src/db_summary.R

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+df <- read.table("../database/vdjdb.txt", header=T, sep="\t")
+
+df$comment <- NULL
+
+cat("Summary:\n")
+str(df)
+summary(df)
+
+cat("Species:\n")
+cat(levels(df$species), "\n")
+
+cat("Ag-species:\n")
+cat(levels(df$antigen.species), "\n")
+cat("Ag-genes:\n")
+cat(levels(df$antigen.gene), "\n")
+
+cat("MHC-A:\n")
+cat(levels(df$mhc.a), "\n")
+cat("MHC-B:\n")
+cat(levels(df$mhc.b), "\n")
+
+cat("References:\n")
+cat(levels(df$reference.id), "\n")
+
+cat("Last record id:\n")
+cat(as.character(sort(df$record.id, decreasing = T)[1]), "\n")
+cat("Last complex id:\n")
+cat(as.character(sort(df$complex.id, decreasing = T)[1]), "\n")