MANIFEST.in

# By default, Distutils (the packaging framework, called in setup.py) will include the following files in your release package:
#    README.txt
#    setup.py
#    The .py files needed by the multi-file modules listed in the packages parameter
#    The individual .py files listed in the py_modules parameter 

# MANIFEST.in commands:
# https://docs.python.org/3/distutils/sourcedist.html#commands

# See explanation in: http://www.diveintopython3.net/packaging.html
# Use .add_data_files and .add_data_dir methods in appropriate
# setup.py files to include non-python files such as documentation,
# data, etc files to distribution. Avoid using MANIFEST.in for that.

# Use check-manifest to detect errors in setup.py:
# https://pypi.python.org/pypi/check-manifest

# Except packaging in Python is a massive pain with incomplete and seemingly
# contradicting docs.

# Include main package and scripts:
recursive-include project_quickstart *.py

# Include scripts in main directory, package info and INI files:
include *.py
include MANIFEST.in
include *.ini
include LICENSE
include INSTALL
include README.rst
include THANKS.rst
include TODO.rst
include COPYING
include *.sh

# Include dependency specifications and Docker:
include external_dependencies.rst
include requirements.txt
include Dockerfile
include Dockerfile_pq_all_tests

# Include project documentation:
recursive-include docs *.html
recursive-include docs *.rst
recursive-include docs *.py
include docs/Makefile
include docs/make.bat
prune docs/_build

# Include files for tests:
include tox.ini 
include .travis.yml
include run_travis_tests.sh
recursive-include tests *

# Include addtional files needed, example data, etc.:
include templates/*
include templates/project_template/*
include templates/project_template/docs/*
include templates/project_template/scripts/*
include templates/project_template/tests/*
include templates/project_template/project_template/*
recursive-include templates *.R
recursive-include templates *.bat
recursive-include templates *.ini
recursive-include templates *.py
recursive-include templates *.rst
recursive-include templates Makefile
recursive-include templates/examples *
recursive-include templates *.bib
recursive-include templates *.sh
recursive-include templates *.yml
recursive-include templates *.Rmd
recursive-include templates *.txt

# Files to exclude:
exclude .gitignore
exclude .dir_bash_history
exclude tests/.dir_bash_history
exclude templates/.dir_bash_history
exclude templates/.DS_Store
exclude templates/project_template/.dir_bash_history
exclude templates/project_template/docs/.dir_bash_history
exclude templates/project_template/scripts/.dir_bash_history
exclude templates/project_template/tests/.dir_bash_history
exclude templates/project_template/project_template/.dir_bash_history
recursive-exclude docs *.pdf
recursive-exclude docs *.html
recursive-exclude project_quickstart *.refactor
recursive-exclude * .DS_Store

# Extensions to include:
#include *.pyxbld
#include *.pyx
#include *.h
#include *.cpp
#include *.h
#include *.pxd
#include *.c