diff --git a/CMakeLists.txt b/CMakeLists.txt
index 94afd3f..341502f 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -84,11 +84,6 @@ endif()
 # Install
 ################################################################################################
 
-set(PKG_CONFIG_INCLUDEDIR "\${prefix}/include")
-set(PKG_CONFIG_LIBDIR "\${prefix}/lib")
-set(PKG_CONFIG_LIBS "-L\${libdir} -lopenjph")
-set(PKG_CONFIG_CFLAGS "-I\${includedir}")
-
 include(GNUInstallDirs)
 install(TARGETS openjph
   ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR}
@@ -96,16 +91,22 @@ install(TARGETS openjph
   LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR})
 
 install(DIRECTORY src/core/common/
-  DESTINATION include/openjph
+  DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/openjph
   FILES_MATCHING
   PATTERN "*.h")
 
 install(FILES "${CMAKE_BINARY_DIR}/${PROJECT_NAME}.pc"
   DESTINATION ${CMAKE_INSTALL_LIBDIR}/pkgconfig)
 
+set(PKG_CONFIG_INCLUDEDIR "\${prefix}/${CMAKE_INSTALL_INCLUDEDIR}")
+set(PKG_CONFIG_LIBDIR "\${prefix}/${CMAKE_INSTALL_LIBDIR}")
+set(PKG_CONFIG_LIBS "-L\${libdir} -lopenjph")
+set(PKG_CONFIG_CFLAGS "-I\${includedir}")
+
 configure_file(
   "${CMAKE_CURRENT_SOURCE_DIR}/src/pkg-config.pc.cmake"
   "${CMAKE_BINARY_DIR}/${PROJECT_NAME}.pc"
+  @ONLY
 )
 
 ################################################################################################
diff --git a/src/apps/CMakeLists.txt b/src/apps/CMakeLists.txt
index 1af20d7..a4a04df 100644
--- a/src/apps/CMakeLists.txt
+++ b/src/apps/CMakeLists.txt
@@ -34,13 +34,15 @@ if(OJPH_BUILD_EXECUTABLES)
   endif() 
   ############################################################
 
-  ## Change folders
-  set(CMAKE_LIBRARY_OUTPUT_DIRECTORY_DEBUG ${CMAKE_BINARY_DIR}/../bin)
-  set(CMAKE_RUNTIME_OUTPUT_DIRECTORY_DEBUG ${CMAKE_BINARY_DIR}/../bin)
-  set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY_DEBUG ${CMAKE_BINARY_DIR}/../lib)
-  set(CMAKE_LIBRARY_OUTPUT_DIRECTORY_RELEASE ${CMAKE_BINARY_DIR}/../bin)
-  set(CMAKE_RUNTIME_OUTPUT_DIRECTORY_RELEASE ${CMAKE_BINARY_DIR}/../bin)
-  set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY_RELEASE ${CMAKE_BINARY_DIR}/../lib)
+  ## change folders but only for Microsoft
+  if(MSVC)
+    set(CMAKE_LIBRARY_OUTPUT_DIRECTORY_DEBUG ${CMAKE_BINARY_DIR}/../bin)
+    set(CMAKE_RUNTIME_OUTPUT_DIRECTORY_DEBUG ${CMAKE_BINARY_DIR}/../bin)
+    set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY_DEBUG ${CMAKE_BINARY_DIR}/../lib)
+    set(CMAKE_LIBRARY_OUTPUT_DIRECTORY_RELEASE ${CMAKE_BINARY_DIR}/../bin)
+    set(CMAKE_RUNTIME_OUTPUT_DIRECTORY_RELEASE ${CMAKE_BINARY_DIR}/../bin)
+    set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY_RELEASE ${CMAKE_BINARY_DIR}/../lib)
+  endif()
 
   ## Build executables
   add_subdirectory(ojph_expand)
diff --git a/src/core/CMakeLists.txt b/src/core/CMakeLists.txt
index e43b697..1f41da8 100644
--- a/src/core/CMakeLists.txt
+++ b/src/core/CMakeLists.txt
@@ -1,10 +1,13 @@
 
-set(CMAKE_LIBRARY_OUTPUT_DIRECTORY_DEBUG ${CMAKE_BINARY_DIR}/../bin)
-set(CMAKE_RUNTIME_OUTPUT_DIRECTORY_DEBUG ${CMAKE_BINARY_DIR}/../bin)
-set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY_DEBUG ${CMAKE_BINARY_DIR}/../lib)
-set(CMAKE_LIBRARY_OUTPUT_DIRECTORY_RELEASE ${CMAKE_BINARY_DIR}/../bin)
-set(CMAKE_RUNTIME_OUTPUT_DIRECTORY_RELEASE ${CMAKE_BINARY_DIR}/../bin)
-set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY_RELEASE ${CMAKE_BINARY_DIR}/../lib)
+## change folders but only for Microsoft
+if (MSVC)
+  set(CMAKE_LIBRARY_OUTPUT_DIRECTORY_DEBUG ${CMAKE_BINARY_DIR}/../bin)
+  set(CMAKE_RUNTIME_OUTPUT_DIRECTORY_DEBUG ${CMAKE_BINARY_DIR}/../bin)
+  set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY_DEBUG ${CMAKE_BINARY_DIR}/../lib)
+  set(CMAKE_LIBRARY_OUTPUT_DIRECTORY_RELEASE ${CMAKE_BINARY_DIR}/../bin)
+  set(CMAKE_RUNTIME_OUTPUT_DIRECTORY_RELEASE ${CMAKE_BINARY_DIR}/../bin)
+  set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY_RELEASE ${CMAKE_BINARY_DIR}/../lib)
+endif()
 
 include_directories(common)
 
@@ -89,7 +92,7 @@ else()
   set_source_files_properties(transform/ojph_transform_avx2.cpp PROPERTIES COMPILE_FLAGS -mavx2)
 endif()
 
-if (WIN32)
+if (MSVC)
   set(OJPH_LIB_NAME_STRING "openjph.${OPENJPH_VERSION_MAJOR}.${OPENJPH_VERSION_MINOR}")
   set_target_properties(openjph
     PROPERTIES