From 7ee22de364d4f518b9f7d74a1acacfe3aa2c736d Mon Sep 17 00:00:00 2001
From: Jia Yu <jiayu@apache.org>
Date: Thu, 12 Oct 2023 02:06:24 -0700
Subject: [PATCH] [DOCS] R: Update roxygen docs (#1049)

---
 R/man/apache.sedona-package.Rd |  5 +++--
 R/man/crs_transform.Rd         |  2 +-
 R/man/spark_read_shapefile.Rd  | 14 +-------------
 R/man/spark_write_geojson.Rd   | 13 +------------
 4 files changed, 6 insertions(+), 28 deletions(-)

diff --git a/R/man/apache.sedona-package.Rd b/R/man/apache.sedona-package.Rd
index 52f4c6c030..71d0262aee 100644
--- a/R/man/apache.sedona-package.Rd
+++ b/R/man/apache.sedona-package.Rd
@@ -6,9 +6,10 @@
 \alias{apache.sedona-package}
 \title{apache.sedona: R Interface for Apache Sedona}
 \description{
-\if{html}{\figure{logo.png}{options: style='float: right' alt='logo' width='120'}}
+\if{html}{\figure{logo.png}{options: align='right' alt='logo' width='120'}}
 
-R interface for 'Apache Sedona' based on 'sparklyr' (\url{https://sedona.apache.org}).
+R interface for 'Apache Sedona' based on 'sparklyr'
+    (<https://sedona.apache.org>).
 }
 \seealso{
 Useful links:
diff --git a/R/man/crs_transform.Rd b/R/man/crs_transform.Rd
index 3aa13cc9d6..22624e2cd3 100644
--- a/R/man/crs_transform.Rd
+++ b/R/man/crs_transform.Rd
@@ -23,7 +23,7 @@ The transformed SpatialRDD.
 }
 \description{
 Transform data within a spatial RDD from one coordinate reference system to
-another.
+another. This uses the lon/lat order since v1.5.0. Before, it used lat/lon
 }
 \examples{
 library(sparklyr)
diff --git a/R/man/spark_read_shapefile.Rd b/R/man/spark_read_shapefile.Rd
index 61c1895e55..dcb59ca472 100644
--- a/R/man/spark_read_shapefile.Rd
+++ b/R/man/spark_read_shapefile.Rd
@@ -4,7 +4,6 @@
 \alias{spark_read_shapefile}
 \alias{spark_read_geojson}
 \alias{spark_read_geoparquet}
-\alias{spark_read_geotiff}
 \title{Read geospatial data into a Spark DataFrame.}
 \usage{
 spark_read_shapefile(sc, name = NULL, path = name, options = list(), ...)
@@ -28,16 +27,6 @@ spark_read_geoparquet(
   memory = TRUE,
   overwrite = TRUE
 )
-
-spark_read_geotiff(
-  sc,
-  name = NULL,
-  path = name,
-  options = list(),
-  repartition = 0,
-  memory = TRUE,
-  overwrite = TRUE
-)
 }
 \arguments{
 \item{sc}{A \code{spark_connection}.}
@@ -47,7 +36,7 @@ spark_read_geotiff(
 \item{path}{The path to the file. Needs to be accessible from the cluster.
 Supports the \samp{"hdfs://"}, \samp{"s3a://"} and \samp{"file://"} protocols.}
 
-\item{options}{A list of strings with additional options. See \url{https://spark.apache.org/docs/latest/sql-programming-guide.html#configuration}.}
+\item{options}{A list of strings with additional options. See \url{http://spark.apache.org/docs/latest/sql-programming-guide.html#configuration}.}
 
 \item{...}{Optional arguments; currently unused.}
 
@@ -69,7 +58,6 @@ Functions to read geospatial data from a variety of formats into Spark DataFrame
 \item \code{spark_read_shapefile}: from a shapefile
 \item \code{spark_read_geojson}: from a geojson file
 \item \code{spark_read_geoparquet}: from a geoparquet file
-\item \code{spark_read_geotiff}: from a GeoTiff file, or a folder containing GeoTiff files
 }
 }
 \examples{
diff --git a/R/man/spark_write_geojson.Rd b/R/man/spark_write_geojson.Rd
index aff5116fea..746dcccc60 100644
--- a/R/man/spark_write_geojson.Rd
+++ b/R/man/spark_write_geojson.Rd
@@ -3,7 +3,6 @@
 \name{spark_write_geojson}
 \alias{spark_write_geojson}
 \alias{spark_write_geoparquet}
-\alias{spark_write_geotiff}
 \alias{spark_write_raster}
 \title{Write geospatial data from a Spark DataFrame.}
 \usage{
@@ -25,15 +24,6 @@ spark_write_geoparquet(
   ...
 )
 
-spark_write_geotiff(
-  x,
-  path,
-  mode = NULL,
-  options = list(),
-  partition_by = NULL,
-  ...
-)
-
 spark_write_raster(
   x,
   path,
@@ -53,7 +43,7 @@ Supports the \samp{"hdfs://"}, \samp{"s3a://"} and \samp{"file://"} protocols.}
   table already exists. Supported values include: 'error', 'append', 'overwrite' and
   ignore. Notice that 'overwrite' will also change the column structure.
 
-  For more details see also \url{https://spark.apache.org/docs/latest/sql-programming-guide.html#save-modes}
+  For more details see also \url{http://spark.apache.org/docs/latest/sql-programming-guide.html#save-modes}
   for your version of Spark.}
 
 \item{options}{A list of strings with additional options.}
@@ -67,7 +57,6 @@ Functions to write geospatial data into a variety of formats from Spark DataFram
 \itemize{
 \item \code{spark_write_geojson}: to GeoJSON
 \item \code{spark_write_geoparquet}: to GeoParquet
-\item \code{spark_write_geotiff}: to GeoTiff from Array[Double] rasters
 \item \code{spark_write_raster}: to raster tiles after using RS output functions (\code{RS_AsXXX})
 }
 }