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changelog.md

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Changelog

Unreleased

Added

  • Functions tag_table_with_age, tag_table_period_length, tag_table_by_type

Fixed

  • Quartiles computed from plot_concepts_set does not depend on value selection anymore

v0.1.8 (2024-06-13)

Fixed

  • Pyarrow fix now work on spark executors.
  • Fix OMOP _date columns issue

Added

  • omop teva module

v0.1.7 (2024-04-12)

Changed

  • Support for pyarrow > 0.17.0

Added

  • biology module refacto
  • load_koalas() not by default in init.py but called in the improve_performance function
  • adding app_name in improve_performances to facilitate app monitoring

Fixed

  • Generation of an inclusion/exclusion flowchart in plotting
  • improve_performance moved from init.py to io/improve_performance.py file
  • Caching in spark instead of koalas to improve speed

v0.1.6 (2023-09-27)

Added

  • Module event_sequences to visualize individual sequences of events.
  • Module age_pyramid to quickly visualize the age and gender distributions in a cohort.

Fixed

v0.1.5 (2023-04-05)

Added

  • BaseData class as a parent class for HiveData, PandasData and PostgresData.
  • Phentyping class with 4 implemented phenotyes.
  • Custom logger to display useful information during computation.

Fixed

  • Add caching to speedup computations.
  • Updated method to persist tables as parquet locally, with a support for ORC-stored I2B2 database.

v0.1.4 (2023-02-09)

Added

  • Allow saving DB locally in client or cluster mode.
  • Add data cleaning function to handle incorrect datetime in spark.
  • Filter biology config on care site.
  • Adding person-dependent datetime_ref to plot_age_pyramid.

Fixed

  • Consultations date for OMOP & I2B2

v0.1.3 (2023-02-02)

Added

  • New BackendDispatcher to handle framework-specific functions
  • I2B2 to OMOP connector

v0.1.2 (2022-12-05)

Added

  • Adding CITATION.cff
  • Using mike as a documentation provider

Fixed

  • Correct build to PyPI
  • Renaming from EDS-Scikit to eds-scikit

v0.1.1 (2022-12-02)

Added

  • Various project metadata
  • Full CI pipeline
  • License checker in CI
  • BackendDispatcher object to help with pandas / koalas manipulation

Fixed

  • Broken links in documentation and badges

v0.1.0 (2022-12-01)

Added

  • Initial commit to GitHub