From db2a0c43722fa82a0a3a4417893f86e750da5f83 Mon Sep 17 00:00:00 2001
From: Starlitnightly <starlitnightly@163.com>
Date: Wed, 30 Oct 2024 04:19:57 +0800
Subject: [PATCH] Added the tutorial of convert pseudotime to RNA velocity
 (#706)

---
 docs/tutorials/index_conventional.md |  1 +
 docs/tutorials/notebooks             |  2 +-
 dynamo/sample_data.py                | 11 +++++++++++
 3 files changed, 13 insertions(+), 1 deletion(-)

diff --git a/docs/tutorials/index_conventional.md b/docs/tutorials/index_conventional.md
index c99184d47..a4e4bf914 100644
--- a/docs/tutorials/index_conventional.md
+++ b/docs/tutorials/index_conventional.md
@@ -4,6 +4,7 @@
 :maxdepth: 1
 
 notebooks/zebrafish
+notebooks/dynamo_beyondvelo
 notebooks/zebrafish_topography_analysis_tutorial
 
 ```
diff --git a/docs/tutorials/notebooks b/docs/tutorials/notebooks
index 5ebbb5c02..d587d9ea8 160000
--- a/docs/tutorials/notebooks
+++ b/docs/tutorials/notebooks
@@ -1 +1 @@
-Subproject commit 5ebbb5c0252cd2734572a6296386478d3d1fe904
+Subproject commit d587d9ea8a55faf0a2d1ef22995331181f63164c
diff --git a/dynamo/sample_data.py b/dynamo/sample_data.py
index 9a2641b17..ca74d6312 100755
--- a/dynamo/sample_data.py
+++ b/dynamo/sample_data.py
@@ -145,6 +145,17 @@ def DentateGyrus(
 
     return adata
 
+def bone_marrow(
+    url: str = "https://figshare.com/ndownloader/files/35826944",
+    filename: str = "bone_marrow.h5ad",
+) -> AnnData:
+    """The bone marrow dataset used in
+
+    This data consists of 27,876 genes across 5,780 cells.
+    """
+    adata = get_adata(url, filename)
+
+    return adata
 
 def Haber(
     url: str = "http://pklab.med.harvard.edu/velocyto/Haber_et_al/Haber_et_al.loom",